Strain Fitness in Pseudomonas putida KT2440 around PP_3467

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
3,932,563	+		PP_3466	0.47	+0.2
3,932,564	-		PP_3466	0.47	+0.4
3,932,608	+		PP_3466	0.49	+0.2
3,932,608	+		PP_3466	0.49	+0.8
3,932,608	+		PP_3466	0.49	+0.5
3,932,609	-		PP_3466	0.49	+0.1
3,932,609	-		PP_3466	0.49	-0.9
3,932,609	-		PP_3466	0.49	-0.5
3,932,609	-		PP_3466	0.49	-0.5
3,932,767	+		PP_3466	0.58	+1.1
3,932,768	-		PP_3466	0.59	-0.7
3,932,768	-		PP_3466	0.59	+0.7
3,933,130	+		PP_3466	0.80	+0.2
3,933,163	+		PP_3466	0.82	+0.6
3,933,209	+		PP_3466	0.84	+2.1
3,933,427	+				+0.4
3,933,427	+				+0.6
3,933,427	+				-0.2
3,933,457	-				+0.8
3,933,457	-				-0.2
3,933,684	+				-1.0
3,933,685	-				-1.2
3,933,742	+		PP_3467	0.13	-1.3
3,934,489	+		PP_3467	0.52	-0.6
3,934,503	-		PP_3467	0.52	-1.5
3,934,596	+		PP_3467	0.57	-1.1
3,934,596	+		PP_3467	0.57	+0.2
3,934,716	-		PP_3467	0.64	-0.9
3,934,934	+		PP_3467	0.75	-1.2
3,934,935	-		PP_3467	0.75	-1.0
3,934,935	-		PP_3467	0.75	-0.4
3,935,327	-				-0.6
3,935,327	-				-1.3
3,935,327	-				-3.1
3,935,397	+				-1.2
3,935,398	-				-0.3
3,935,418	-				+0.3
3,935,504	-				+0.3
3,935,536	-				+0.2
3,935,607	-				+0.1
3,935,678	-				-0.2
3,935,975	+				-0.4
3,936,174	-				+0.1
3,936,207	-				+0.5
3,936,235	-				-1.0
3,936,245	+				-0.2
3,936,245	+				+0.1
3,936,254	-				-0.6
3,936,254	-				+1.0
3,936,315	+		PP_3469	0.10	-1.2
3,936,403	+		PP_3469	0.19	+1.2