Strain Fitness in Pseudomonas putida KT2440 around PP_3463

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
3,925,943	+		PP_5602	0.66	-1.9
3,926,086	-		PP_5602	0.75	-0.7
3,926,159	+		PP_5602	0.80	-0.1
3,926,160	-		PP_5602	0.80	-0.5
3,926,274	+		PP_5602	0.87	-0.4
3,926,275	-		PP_5602	0.87	-0.8
3,926,275	-		PP_5602	0.87	-1.1
3,926,276	+		PP_5602	0.87	-1.3
3,926,276	+		PP_5602	0.87	-0.5
3,926,276	+		PP_5602	0.87	-0.4
3,926,276	+		PP_5602	0.87	-0.6
3,926,276	+		PP_5602	0.87	-0.8
3,926,276	+		PP_5602	0.87	-1.1
3,926,276	+		PP_5602	0.87	-0.3
3,926,277	-		PP_5602	0.87	-0.9
3,926,277	-		PP_5602	0.87	-0.3
3,926,277	-		PP_5602	0.87	-0.3
3,926,527	+				-1.7
3,926,528	-				+0.6
3,927,215	+		PP_3463	0.26	-0.9
3,927,215	+		PP_3463	0.26	+0.6
3,927,215	+		PP_3463	0.26	-0.8
3,927,216	-		PP_3463	0.26	+0.8
3,927,216	-		PP_3463	0.26	+0.9
3,927,218	-		PP_3463	0.26	+0.8
3,927,556	-		PP_3463	0.49	+0.2
3,927,764	+		PP_3463	0.62	+0.6
3,927,764	+		PP_3463	0.62	+0.8
3,927,765	-		PP_3463	0.63	+0.9
3,927,765	-		PP_3463	0.63	+0.6
3,927,906	-		PP_3463	0.72	-0.0
3,927,972	-		PP_3463	0.76	-1.1
3,927,972	-		PP_3463	0.76	+0.6
3,928,024	-		PP_3463	0.80	-0.9
3,928,036	-		PP_3463	0.81	+1.0
3,928,126	+		PP_3463	0.87	+1.6
3,928,127	-		PP_3463	0.87	+0.3
3,928,238	+				+1.3
3,928,367	+				-0.1
3,928,367	+				+0.5
3,928,368	-				+1.3
3,928,376	+				-0.1
3,928,376	+				-0.4
3,928,390	+				+0.3
3,928,443	+				-0.0
3,928,443	+				-0.7
3,928,502	-				+1.6
3,928,525	-				+1.0
3,928,525	-				+0.8
3,928,525	-				+0.1
3,928,525	-				-0.0
3,928,534	-				-1.7
3,928,534	-				+0.4
3,928,534	-				-0.1
3,928,656	+		PP_3464	0.15	-0.6
3,928,660	+		PP_3464	0.15	+0.2
3,928,809	+		PP_3464	0.26	-0.4
3,928,810	-		PP_3464	0.26	+0.6
3,928,977	+		PP_3464	0.39	+0.3
3,928,980	+				+0.5
3,928,980	+		PP_3464	0.39	+0.9
3,928,980	+		PP_3464	0.39	+1.2
3,928,981	-		PP_3464	0.39	+0.1
3,928,981	-		PP_3464	0.39	-0.6
3,929,083	-		PP_3464	0.47	-0.1