Strain Fitness in Pseudomonas putida KT2440 around PP_2688

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
3,076,868	+				+0.8
3,076,869	-				+0.7
3,076,872	+				+0.5
3,076,872	+				+0.0
3,076,873	-				+0.4
3,076,873	-				-1.8
3,076,875	-				-0.2
3,076,875	-				+1.0
3,076,875	-				+1.2
3,076,906	-				+2.7
3,076,906	-				+1.0
3,076,906	-				+1.1
3,076,906	-				+0.5
3,076,918	+				-0.0
3,077,191	+		PP_2687	0.30	+0.3
3,077,212	+		PP_2687	0.33	+0.4
3,077,213	-		PP_2687	0.33	-0.1
3,077,249	-		PP_2687	0.36	-0.2
3,077,249	-		PP_2687	0.36	+0.3
3,077,252	-		PP_2687	0.37	+0.4
3,077,305	+				+0.3
3,077,330	+		PP_2687	0.45	+2.0
3,077,331	-		PP_2687	0.45	+1.1
3,077,375	-		PP_2687	0.50	+0.8
3,077,375	-		PP_2687	0.50	+0.8
3,077,543	+		PP_2687	0.67	+0.4
3,077,593	+		PP_2687	0.73	+0.9
3,077,593	+		PP_2687	0.73	-0.7
3,077,594	-		PP_2687	0.73	+0.3
3,077,594	-		PP_2687	0.73	-0.7
3,077,594	-		PP_2687	0.73	+0.7
3,077,674	+		PP_2687	0.81	+0.3
3,077,764	+				-0.0
3,077,765	-				+0.8
3,078,072	-		PP_2688	0.15	+0.7
3,078,073	+		PP_2688	0.15	+0.5
3,078,074	-		PP_2688	0.15	+0.4
3,078,074	-		PP_2688	0.15	-0.1
3,078,207	+		PP_2688	0.25	+0.4
3,078,207	+		PP_2688	0.25	+0.1
3,078,208	-		PP_2688	0.25	+0.8
3,078,310	+		PP_2688	0.32	+0.1
3,078,311	-				-1.2
3,078,311	-		PP_2688	0.32	+0.8
3,078,311	-		PP_2688	0.32	+0.5
3,078,377	-		PP_2688	0.37	+0.4
3,078,439	+		PP_2688	0.41	+0.2
3,078,440	-		PP_2688	0.41	+0.4
3,078,502	+		PP_2688	0.46	-0.2
3,078,502	+		PP_2688	0.46	+1.0
3,078,502	+		PP_2688	0.46	+0.9
3,078,502	+		PP_2688	0.46	-0.4
3,078,502	+		PP_2688	0.46	-0.1
3,078,503	-		PP_2688	0.46	-0.0
3,078,503	-		PP_2688	0.46	+1.5
3,078,503	-		PP_2688	0.46	+0.0
3,078,503	-		PP_2688	0.46	+0.0
3,078,503	-		PP_2688	0.46	+0.5
3,078,503	-		PP_2688	0.46	+0.0
3,078,760	+		PP_2688	0.64	+1.0
3,078,760	+		PP_2688	0.64	-0.2
3,078,760	+		PP_2688	0.64	-0.5
3,078,761	-		PP_2688	0.64	-0.0
3,078,761	-		PP_2688	0.64	+0.2
3,078,825	+		PP_2688	0.69	+0.3
3,078,845	+		PP_2688	0.70	+1.2
3,078,845	+		PP_2688	0.70	+1.1
3,078,846	-		PP_2688	0.70	+0.2
3,078,853	+		PP_2688	0.71	+0.8
3,078,854	-		PP_2688	0.71	+0.9
3,078,895	+		PP_2688	0.74	-1.1
3,078,961	+		PP_2688	0.78	+0.8
3,079,099	+		PP_2688	0.88	+0.9
3,079,099	+		PP_2688	0.88	-0.6
3,079,265	+				+0.6
3,079,266	-				-0.5
3,079,266	-				+0.0
3,079,341	+				+0.5
3,079,341	+				+0.0
3,079,417	+				-0.2
3,079,593	-				-0.9
3,079,593	-				+0.6
3,079,673	-				-0.0
3,079,673	-				-0.8
3,079,712	+				-0.0
3,079,712	+				+0.6
3,079,763	-		PP_2689	0.17	+0.1
3,079,796	+		PP_2689	0.26	-0.8
3,079,816	+		PP_2689	0.31	+0.8
3,079,817	-		PP_2689	0.32	-0.1
3,079,817	-		PP_2689	0.32	-0.2
3,079,829	+		PP_2689	0.35	-0.2
3,079,830	-		PP_2689	0.35	+0.3
3,079,847	+		PP_2689	0.40	-0.2
3,079,968	+		PP_2689	0.72	-0.8
3,079,991	+		PP_2689	0.78	+0.1
3,079,992	-		PP_2689	0.79	-0.6
3,079,992	-		PP_2689	0.79	+1.7
3,079,999	-		PP_2689	0.81	+0.4
3,080,197	-		PP_2690	0.14	+0.9
3,080,211	+		PP_2690	0.16	+0.4
3,080,245	+		PP_2690	0.21	+0.5
3,080,245	+		PP_2690	0.21	+0.5
3,080,246	-		PP_2690	0.21	+0.4
3,080,246	-		PP_2690	0.21	+0.2
3,080,246	-		PP_2690	0.21	-0.2