Strain Fitness in Pseudomonas putida KT2440 around PP_2679

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
3,066,132	+				-0.6
3,066,269	+		PP_2678	0.44	+1.3
3,066,270	-		PP_2678	0.44	+1.4
3,066,270	-		PP_2678	0.44	+0.2
3,066,270	-		PP_2678	0.44	+1.5
3,066,270	-		PP_2678	0.44	+0.6
3,066,270	-		PP_2678	0.44	+1.4
3,066,389	-		PP_2678	0.56	+0.5
3,066,455	+		PP_2678	0.64	+0.2
3,066,456	-		PP_2678	0.64	+0.6
3,066,456	-		PP_2678	0.64	+0.5
3,066,549	+		PP_2678	0.74	+1.4
3,066,605	+		PP_2678	0.80	+1.2
3,066,720	-				+0.5
3,066,955	-				-2.3
3,067,128	-				-2.8
3,067,156	+		PP_2679	0.11	-2.4
3,067,253	+		PP_2679	0.16	-2.2
3,067,253	+				+0.8
3,067,268	+		PP_2679	0.17	-2.4
3,067,268	+		PP_2679	0.17	-1.3
3,067,320	-		PP_2679	0.20	-1.4
3,067,362	+		PP_2679	0.22	-1.8
3,067,363	-		PP_2679	0.22	-2.2
3,067,493	+		PP_2679	0.30	-0.2
3,067,646	+		PP_2679	0.38	-1.6
3,067,647	-		PP_2679	0.38	-2.7
3,067,652	+		PP_2679	0.39	-1.7
3,067,652	+		PP_2679	0.39	-1.7
3,067,652	+		PP_2679	0.39	-2.8
3,067,652	+		PP_2679	0.39	-3.5
3,067,652	+		PP_2679	0.39	-2.1
3,067,653	-		PP_2679	0.39	-2.7
3,067,761	-		PP_2679	0.45	-1.0
3,067,763	+		PP_2679	0.45	-2.4
3,067,763	+		PP_2679	0.45	-1.9
3,067,764	-		PP_2679	0.45	-2.8
3,067,847	+		PP_2679	0.49	-3.2
3,067,847	+		PP_2679	0.49	-1.9
3,067,847	+		PP_2679	0.49	-3.0
3,067,847	+		PP_2679	0.49	-2.3
3,067,848	-		PP_2679	0.50	+1.0
3,068,024	+		PP_2679	0.59	-2.5
3,068,228	+		PP_2679	0.71	-1.0
3,068,229	-		PP_2679	0.71	-2.1
3,068,229	-		PP_2679	0.71	-1.9
3,068,229	-		PP_2679	0.71	-1.7
3,068,229	-		PP_2679	0.71	-1.9
3,068,252	+		PP_2679	0.72	-3.0
3,068,252	+		PP_2679	0.72	-1.6
3,068,252	+		PP_2679	0.72	-3.5
3,068,303	+		PP_2679	0.75	-1.6
3,068,304	-		PP_2679	0.75	-1.7
3,068,304	-		PP_2679	0.75	-2.8
3,068,304	-		PP_2679	0.75	-1.4
3,068,305	+		PP_2679	0.75	-2.4
3,068,306	-		PP_2679	0.75	-1.8
3,068,363	+		PP_2679	0.78	-1.8
3,068,426	+		PP_2679	0.82	-3.9
3,068,427	-		PP_2679	0.82	-2.1
3,068,427	-		PP_2679	0.82	-4.7
3,068,600	+				-1.2
3,068,601	-				-2.3
3,068,601	-				-1.7
3,068,601	-				-3.2
3,068,610	+				-1.7
3,068,748	-				-0.1
3,068,759	-				+0.1
3,068,759	-				+1.4
3,068,797	+				+0.3
3,068,797	+				+3.1
3,068,801	-				+0.8
3,068,801	-				+0.4
3,068,858	+				+1.5
3,068,858	+				+0.2
3,068,918	+				-0.3
3,068,919	-				+0.4
3,068,919	-				+0.8
3,069,014	+				+0.6
3,069,328	-		PP_2680	0.27	+1.5