Strain Fitness in Pseudomonas putida KT2440 around PP_2656

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
3,042,371	+		PP_5537	0.87	+1.5
3,042,372	-		PP_5537	0.87	+0.8
3,042,431	-				+0.3
3,042,581	+		PP_2654	0.40	+1.6
3,042,582	-		PP_2654	0.41	+0.5
3,042,582	-		PP_2654	0.41	-0.1
3,042,582	-		PP_2654	0.41	+0.6
3,042,596	+		PP_2654	0.44	-0.0
3,042,597	-		PP_2654	0.44	+0.6
3,042,683	+		PP_2654	0.64	+0.6
3,042,683	+		PP_2654	0.64	+0.8
3,042,684	-		PP_2654	0.65	+0.3
3,042,684	-		PP_2654	0.65	+0.2
3,042,684	-		PP_2654	0.65	+0.3
3,042,734	-		PP_2654	0.76	+0.1
3,042,734	-		PP_2654	0.76	+0.3
3,042,769	+		PP_2654	0.85	+1.3
3,042,872	+				+0.1
3,042,878	+				-0.2
3,042,878	+				+0.3
3,042,881	+				-0.4
3,042,888	+				-0.2
3,042,963	+		PP_2655	0.24	+0.1
3,042,964	-		PP_2655	0.25	-1.2
3,042,964	-		PP_2655	0.25	+0.9
3,043,005	+				+0.8
3,043,014	+		PP_2655	0.46	-0.6
3,043,116	-				-0.5
3,043,188	+				+0.7
3,043,266	-				+0.9
3,043,266	-				-0.6
3,043,534	+		PP_2656	0.18	+0.1
3,043,534	+		PP_2656	0.18	-0.7
3,043,535	-		PP_2656	0.18	+0.8
3,043,691	-		PP_2656	0.33	+0.3
3,043,710	+		PP_2656	0.35	-0.0
3,043,710	+		PP_2656	0.35	+0.5
3,043,738	+		PP_2656	0.38	+0.6
3,043,746	+		PP_2656	0.39	+0.1
3,044,027	-		PP_2656	0.65	+0.4
3,044,095	+		PP_2656	0.72	+1.0
3,044,096	-		PP_2656	0.72	+0.6
3,044,096	-		PP_2656	0.72	+1.2
3,044,099	+		PP_2656	0.72	+1.2
3,044,212	+		PP_2656	0.83	+0.6
3,044,212	+		PP_2656	0.83	+0.5
3,044,212	+		PP_2656	0.83	+1.4
3,044,212	+		PP_2656	0.83	+0.8
3,044,213	-		PP_2656	0.83	+0.5
3,044,284	+				+0.9
3,044,284	+				+0.0
3,044,285	-				-0.3
3,044,326	+				-0.7
3,044,365	-				+0.2
3,044,365	-				-0.3
3,044,386	+				-0.1
3,044,386	+				+0.8
3,044,387	-				-1.1
3,044,391	-				+1.4
3,044,693	+		PP_2657	0.24	+0.1
3,044,693	+				+0.8
3,044,694	-		PP_2657	0.24	+0.6
3,044,694	-		PP_2657	0.24	+0.1
3,044,694	-		PP_2657	0.24	+0.6
3,044,694	-		PP_2657	0.24	-0.3
3,044,698	+		PP_2657	0.25	+0.6
3,044,699	-		PP_2657	0.25	+1.1
3,044,719	+		PP_2657	0.27	+1.6
3,044,719	+		PP_2657	0.27	+0.2
3,044,727	-		PP_2657	0.28	-0.1
3,044,888	+		PP_2657	0.44	+1.1
3,044,888	+		PP_2657	0.44	+0.0
3,044,888	+		PP_2657	0.44	+1.2
3,044,888	+		PP_2657	0.44	+0.0
3,044,888	+		PP_2657	0.44	+2.3
3,044,888	+		PP_2657	0.44	-0.9
3,044,889	-		PP_2657	0.44	+0.6
3,044,889	-		PP_2657	0.44	+0.3
3,044,889	-		PP_2657	0.44	+0.6
3,044,889	-		PP_2657	0.44	-0.3
3,045,063	+		PP_2657	0.62	+0.0
3,045,064	-		PP_2657	0.62	+1.9
3,045,064	-		PP_2657	0.62	+1.0
3,045,064	-		PP_2657	0.62	+0.4
3,045,068	-		PP_2657	0.63	+0.5
3,045,100	+		PP_2657	0.66	+0.1
3,045,100	+		PP_2657	0.66	-0.1
3,045,103	+		PP_2657	0.66	+0.5
3,045,104	-		PP_2657	0.67	+0.0
3,045,336	-				+1.4
3,045,348	+				+0.7