Strain Fitness in Pseudomonas putida KT2440 around PP_2562

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
2,921,030	+				-0.5
2,921,080	-				-0.5
2,921,081	+				+0.4
2,921,147	+				+0.1
2,921,499	-				+0.0
2,921,499	-				-1.3
2,921,505	-				-0.9
2,921,719	+				-0.7
2,921,719	+				-0.3
2,921,720	-				-0.3
2,921,720	-				+0.9
2,921,720	-				-1.2
2,921,744	-				-0.5
2,922,069	+		PP_2562	0.21	+1.9
2,922,069	+		PP_2562	0.21	-0.5
2,922,070	-		PP_2562	0.21	-0.6
2,922,215	+		PP_2562	0.51	-1.5
2,922,215	+		PP_2562	0.51	-1.6
2,922,215	+		PP_2562	0.51	-2.3
2,922,216	-		PP_2562	0.51	+0.4
2,922,235	-		PP_2562	0.55	-0.2
2,922,342	+		PP_2562	0.77	-0.6
2,922,342	+		PP_2562	0.77	+0.1
2,922,342	+		PP_2562	0.77	-0.6
2,922,342	+		PP_2562	0.77	+0.7
2,922,343	-		PP_2562	0.77	-0.5
2,922,343	-		PP_2562	0.77	-1.4
2,922,453	-				+0.6
2,922,453	-				-0.5
2,922,578	+				-0.1
2,922,578	+				+0.1
2,922,677	+				+0.6
2,922,677	+				+0.1
2,922,678	-				-0.0
2,922,678	-				+0.6
2,922,681	+				-0.6
2,922,682	-				-0.3
2,922,682	-				+0.3
2,922,683	+				-0.2
2,922,683	+				-0.3
2,922,683	+				+0.3
2,922,684	+				-0.8
2,922,684	-				-0.4
2,922,684	-				-0.0
2,922,684	-				-0.5
2,922,684	-				+0.4
2,922,684	-				-0.8
2,922,684	-				+0.4
2,922,684	-				-0.2
2,922,684	-				-0.3
2,922,734	-				+0.5
2,922,791	+		PP_2563	0.11	-0.5
2,922,791	+		PP_2563	0.11	-0.6
2,922,791	+		PP_2563	0.11	-0.5
2,922,791	+		PP_2563	0.11	-0.3
2,922,791	+		PP_2563	0.11	+0.4
2,922,792	-		PP_2563	0.11	+0.5
2,922,792	-		PP_2563	0.11	+0.2
2,922,799	-		PP_2563	0.11	-0.8
2,922,799	-		PP_2563	0.11	+1.2
2,922,922	+		PP_2563	0.16	+0.4
2,922,923	-		PP_2563	0.16	-1.6
2,922,923	-		PP_2563	0.16	-0.0
2,922,923	-		PP_2563	0.16	+0.1
2,922,923	-		PP_2563	0.16	-0.7
2,922,979	+		PP_2563	0.18	-0.3
2,923,130	+		PP_2563	0.23	-0.6
2,923,136	+		PP_2563	0.24	+1.1
2,923,136	+		PP_2563	0.24	+0.3
2,923,137	-		PP_2563	0.24	-0.4
2,923,213	+		PP_2563	0.26	+0.3
2,923,235	+		PP_2563	0.27	-1.0
2,923,235	+		PP_2563	0.27	-0.1
2,923,235	+		PP_2563	0.27	+0.4
2,923,235	+		PP_2563	0.27	-0.3