Strain Fitness in Pseudomonas putida KT2440 around PP_1989

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
2,254,102	+		PP_1988	0.39	-4.2
2,254,156	+		PP_1988	0.44	-4.4
2,254,157	-		PP_1988	0.44	-3.7
2,254,157	-		PP_1988	0.44	-2.8
2,254,157	-		PP_1988	0.44	-4.9
2,254,172	-		PP_1988	0.45	-2.4
2,254,345	+		PP_1988	0.61	-4.0
2,254,345	+		PP_1988	0.61	-3.4
2,254,345	+		PP_1988	0.61	-5.0
2,254,345	+		PP_1988	0.61	-4.7
2,254,346	-		PP_1988	0.61	-1.8
2,254,346	-		PP_1988	0.61	-4.3
2,254,346	-		PP_1988	0.61	-3.8
2,254,346	-		PP_1988	0.61	-3.7
2,254,510	+		PP_1988	0.76	-5.0
2,254,511	-		PP_1988	0.77	-4.7
2,254,511	-		PP_1988	0.77	-4.1
2,254,511	-		PP_1988	0.77	-2.9
2,254,511	-		PP_1988	0.77	-4.4
2,254,511	-		PP_1988	0.77	-4.7
2,254,603	+		PP_1988	0.85	-3.0
2,254,717	-				-3.4
2,254,762	+				-0.5
2,254,762	+				+0.3
2,254,809	+				-2.4
2,254,809	+				+0.0
2,254,820	+				-1.8
2,255,986	+				+0.7
2,255,987	-				+0.3
2,255,995	-				-0.2
2,256,006	+				-0.4
2,256,007	-				-0.8
2,256,007	-				+0.6
2,256,055	+				-0.1
2,256,118	-				-1.5
2,256,376	-				-0.7
2,256,376	-				+0.5
2,256,376	-				+0.8
2,256,399	-				+0.2
2,256,512	-				+0.2
2,256,530	-				-0.4