Strain Fitness in Pseudomonas putida KT2440 around PP_1379

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	3-methyl-3-buten-1-ol 0.1 vol% (C)
1,570,907	+		PP_1378	0.25	+0.2
1,570,907	+		PP_1378	0.25	-0.1
1,570,907	+		PP_1378	0.25	+1.0
1,570,908	-		PP_1378	0.25	+0.6
1,570,908	-		PP_1378	0.25	+0.0
1,570,908	-		PP_1378	0.25	-0.7
1,570,908	-		PP_1378	0.25	+0.5
1,570,908	-		PP_1378	0.25	+0.5
1,570,941	+		PP_1378	0.28	-0.1
1,570,942	-		PP_1378	0.28	+0.6
1,571,003	+		PP_1378	0.33	+0.6
1,571,004	-				+1.9
1,571,004	-		PP_1378	0.33	+0.8
1,571,004	-		PP_1378	0.33	+1.3
1,571,004	-		PP_1378	0.33	-0.2
1,571,004	-		PP_1378	0.33	+0.3
1,571,004	-		PP_1378	0.33	-1.2
1,571,016	+		PP_1378	0.34	-0.6
1,571,017	-		PP_1378	0.34	-0.4
1,571,057	+		PP_1378	0.37	+0.9
1,571,342	+		PP_1378	0.59	-2.3
1,571,342	+		PP_1378	0.59	-0.6
1,571,343	-		PP_1378	0.59	-0.5
1,571,357	+		PP_1378	0.60	+0.4
1,571,357	+		PP_1378	0.60	+0.2
1,571,357	+		PP_1378	0.60	-0.3
1,571,357	+		PP_1378	0.60	+0.7
1,571,357	+		PP_1378	0.60	-0.8
1,571,358	-		PP_1378	0.60	+0.6
1,571,358	-		PP_1378	0.60	+0.0
1,571,358	-		PP_1378	0.60	-1.0
1,571,358	-		PP_1378	0.60	-0.6
1,571,358	-		PP_1378	0.60	-0.2
1,571,358	-		PP_1378	0.60	+0.3
1,571,358	-		PP_1378	0.60	-0.1
1,571,358	-		PP_1378	0.60	-0.4
1,571,358	-		PP_1378	0.60	+0.2
1,571,358	-		PP_1378	0.60	+0.3
1,571,358	-		PP_1378	0.60	-0.1
1,571,358	-		PP_1378	0.60	+0.3
1,571,358	-		PP_1378	0.60	+0.4
1,571,359	+		PP_1378	0.60	-0.3
1,571,359	+		PP_1378	0.60	-0.7
1,571,360	-		PP_1378	0.60	-1.0
1,571,369	+		PP_1378	0.61	-1.4
1,571,370	-		PP_1378	0.61	+0.7
1,571,411	+				-0.3
1,571,412	-		PP_1378	0.64	+0.3
1,571,412	-		PP_1378	0.64	-1.4
1,571,412	-		PP_1378	0.64	+0.2
1,571,609	-		PP_1378	0.80	-0.3
1,571,621	+		PP_1378	0.81	+0.2
1,571,622	-		PP_1378	0.81	+0.4
1,571,622	-				-0.7
1,571,622	-		PP_1378	0.81	+0.3
1,571,696	+		PP_1378	0.87	+0.8
1,571,735	+		PP_1378	0.90	+0.8
1,571,735	+		PP_1378	0.90	+0.2
1,571,781	-				+0.8
1,571,787	-				+0.7
1,571,787	-				+0.8
1,571,867	+				+1.5
1,571,903	+				-0.1
1,571,904	-				+0.1
1,572,062	+		PP_1379	0.14	+0.4
1,572,063	-		PP_1379	0.14	+0.2
1,572,063	-		PP_1379	0.14	+0.4
1,572,173	+		PP_1379	0.22	-1.0
1,572,173	+		PP_1379	0.22	-0.9
1,572,173	+		PP_1379	0.22	+0.1
1,572,173	+		PP_1379	0.22	-0.5
1,572,174	-		PP_1379	0.22	-0.5
1,572,331	+		PP_1379	0.33	+0.1
1,572,332	-		PP_1379	0.33	-0.1
1,572,332	-		PP_1379	0.33	+0.2
1,572,384	+		PP_1379	0.37	-0.8
1,572,637	+		PP_1379	0.56	-0.6
1,572,637	+		PP_1379	0.56	-0.1
1,572,834	+		PP_1379	0.71	+1.6
1,572,835	-		PP_1379	0.71	+0.3
1,572,866	-		PP_1379	0.73	+0.4
1,573,166	+				+0.1
1,573,279	+				-0.6
1,573,280	-				+0.5
1,573,280	-				-1.9
1,573,399	+		PP_1380	0.20	+0.4
1,573,400	-		PP_1380	0.20	+0.5
1,573,444	+		PP_1380	0.25	-0.9
1,573,444	+		PP_1380	0.25	-0.3
1,573,445	-		PP_1380	0.26	-0.0
1,573,445	-		PP_1380	0.26	-0.3
1,573,755	+		PP_1380	0.65	+0.6
1,573,755	+		PP_1380	0.65	-0.1
1,573,792	+		PP_1380	0.69	+0.5
1,573,793	-		PP_1380	0.69	+0.1
1,573,945	+		PP_1380	0.89	+1.4
1,573,946	-		PP_1380	0.89	-0.9
1,574,063	+				+0.4
1,574,064	-				+0.1
1,574,064	-				+0.3