Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0379 and PP_0380 are separated by 78 nucleotides PP_0380 and PP_0381 are separated by 159 nucleotides
PP_0379: PP_0379 - Coenzyme PQQ synthesis protein B, at 458,943 to 459,854
_0379
PP_0380: PP_0380 - Coenzyme PQQ synthesis protein A, at 459,933 to 460,004
_0380
PP_0381: PP_0381 - Coenzyme PQQ synthesis protein F, at 460,164 to 462,464
_0381
Position (kb) 459
460
461 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 458.940 kb on + strand at 458.944 kb on + strand at 458.944 kb on + strand at 458.945 kb on - strand at 459.053 kb on + strand, within PP_0379 at 459.054 kb on - strand, within PP_0379 at 459.054 kb on - strand, within PP_0379 at 459.054 kb on - strand, within PP_0379 at 459.054 kb on - strand, within PP_0379 at 459.057 kb on + strand, within PP_0379 at 459.057 kb on + strand, within PP_0379 at 459.057 kb on + strand, within PP_0379 at 459.058 kb on - strand, within PP_0379 at 459.246 kb on + strand, within PP_0379 at 459.246 kb on + strand, within PP_0379 at 459.246 kb on + strand, within PP_0379 at 459.268 kb on + strand, within PP_0379 at 459.268 kb on + strand, within PP_0379 at 459.352 kb on + strand, within PP_0379 at 459.352 kb on + strand, within PP_0379 at 459.700 kb on - strand, within PP_0379 at 459.700 kb on - strand, within PP_0379 at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.850 kb on + strand at 459.851 kb on - strand at 459.851 kb on - strand at 459.851 kb on - strand at 459.851 kb on - strand at 459.866 kb on - strand at 459.923 kb on + strand at 459.923 kb on + strand at 459.923 kb on + strand at 459.935 kb on - strand at 459.949 kb on + strand, within PP_0380 at 459.949 kb on + strand, within PP_0380 at 459.949 kb on + strand, within PP_0380 at 459.950 kb on - strand at 459.950 kb on - strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.985 kb on + strand, within PP_0380 at 459.986 kb on - strand, within PP_0380 at 460.010 kb on + strand at 460.010 kb on + strand at 460.010 kb on + strand at 460.011 kb on - strand at 460.044 kb on - strand at 460.044 kb on - strand at 460.044 kb on - strand at 460.046 kb on + strand at 460.047 kb on - strand at 460.095 kb on + strand at 460.100 kb on + strand at 460.100 kb on + strand at 460.100 kb on + strand at 460.101 kb on - strand at 460.126 kb on + strand at 460.130 kb on + strand at 460.161 kb on + strand at 460.161 kb on + strand at 460.161 kb on + strand at 460.161 kb on + strand at 460.162 kb on - strand at 460.162 kb on - strand at 460.218 kb on + strand at 460.219 kb on - strand at 460.219 kb on - strand at 460.289 kb on + strand at 460.570 kb on - strand, within PP_0381 at 460.730 kb on + strand, within PP_0381 at 460.731 kb on - strand, within PP_0381
Per-strain Table
Position Strand Gene LocusTag Fraction 3-methyl-3-buten-1-ol 0.1 vol% (C) remove 458,940 + +0.6 458,944 + -2.1 458,944 + -1.7 458,945 - -0.3 459,053 + PP_0379 0.12 -3.8 459,054 - PP_0379 0.12 -0.6 459,054 - PP_0379 0.12 -1.1 459,054 - PP_0379 0.12 -0.3 459,054 - PP_0379 0.12 -1.7 459,057 + PP_0379 0.12 -4.8 459,057 + PP_0379 0.12 -3.7 459,057 + PP_0379 0.12 -3.5 459,058 - PP_0379 0.13 -2.8 459,246 + PP_0379 0.33 -3.4 459,246 + PP_0379 0.33 -4.7 459,246 + PP_0379 0.33 -3.9 459,268 + PP_0379 0.36 -3.6 459,268 + PP_0379 0.36 -2.8 459,352 + PP_0379 0.45 -2.4 459,352 + PP_0379 0.45 -3.7 459,700 - PP_0379 0.83 -0.9 459,700 - PP_0379 0.83 -2.7 459,850 + -3.3 459,850 + -3.3 459,850 + -4.0 459,850 + -0.8 459,850 + -4.4 459,850 + -3.3 459,850 + -3.5 459,851 - -2.5 459,851 - -5.1 459,851 - -2.8 459,851 - -1.6 459,866 - +0.4 459,923 + -3.1 459,923 + -4.8 459,923 + -2.4 459,935 - -0.3 459,949 + PP_0380 0.22 -4.6 459,949 + PP_0380 0.22 -3.7 459,949 + PP_0380 0.22 -2.7 459,950 - +2.9 459,950 - PP_0380 0.24 +0.1 459,985 + PP_0380 0.72 -1.7 459,985 + PP_0380 0.72 -0.4 459,985 + PP_0380 0.72 -0.1 459,985 + PP_0380 0.72 -0.1 459,985 + PP_0380 0.72 +0.9 459,985 + PP_0380 0.72 -2.5 459,986 - PP_0380 0.74 -0.6 460,010 + -1.9 460,010 + -2.8 460,010 + -3.8 460,011 - +1.0 460,044 - -0.3 460,044 - -0.3 460,044 - +0.3 460,046 + -0.4 460,047 - -0.1 460,095 + +0.5 460,100 + -0.4 460,100 + +1.5 460,100 + -0.4 460,101 - -0.7 460,126 + +0.7 460,130 + +0.5 460,161 + -0.3 460,161 + +0.8 460,161 + +0.7 460,161 + -0.2 460,162 - +0.6 460,162 - -0.1 460,218 + -2.4 460,219 - -2.2 460,219 - -1.3 460,289 + -4.5 460,570 - PP_0381 0.18 -3.8 460,730 + PP_0381 0.25 -3.4 460,731 - PP_0381 0.25 -1.2
Or see this region's nucleotide sequence