Strain Fitness in Pseudomonas putida KT2440 around PP_0376

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0375 and PP_0376 overlap by 35 nucleotidesPP_0376 and PP_0377 are separated by 1 nucleotidesPP_0377 and PP_0378 overlap by 4 nucleotides PP_0375: PP_0375 - Prolyl oligopeptidase family protein, at 454,816 to 456,654 _0375 PP_0376: PP_0376 - Coenzyme PQQ synthesis protein E, at 456,620 to 457,750 _0376 PP_0377: PP_0377 - coenzyme PQQ synthesis protein D, at 457,752 to 458,027 _0377 PP_0378: PP_0378 - Pyrroloquinoline-quinone synthase, at 458,024 to 458,779 _0378 Position (kb) 456 457 458Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 455.641 kb on + strand, within PP_0375at 455.641 kb on + strand, within PP_0375at 455.642 kb on - strand, within PP_0375at 455.708 kb on + strand, within PP_0375at 455.708 kb on + strand, within PP_0375at 455.708 kb on + strand, within PP_0375at 455.708 kb on + strand, within PP_0375at 455.708 kb on + strand, within PP_0375at 455.709 kb on - strand, within PP_0375at 455.709 kb on - strand, within PP_0375at 455.709 kb on - strand, within PP_0375at 455.750 kb on + strand, within PP_0375at 455.750 kb on + strand, within PP_0375at 455.750 kb on + strand, within PP_0375at 455.750 kb on + strand, within PP_0375at 455.751 kb on - strandat 455.773 kb on - strand, within PP_0375at 455.773 kb on - strand, within PP_0375at 455.773 kb on - strand, within PP_0375at 455.773 kb on - strand, within PP_0375at 455.862 kb on + strand, within PP_0375at 455.862 kb on + strand, within PP_0375at 455.863 kb on - strand, within PP_0375at 455.863 kb on - strand, within PP_0375at 455.863 kb on - strand, within PP_0375at 456.166 kb on - strand, within PP_0375at 456.176 kb on + strand, within PP_0375at 456.177 kb on - strand, within PP_0375at 456.177 kb on - strand, within PP_0375at 456.340 kb on + strand, within PP_0375at 456.365 kb on + strand, within PP_0375at 456.365 kb on + strand, within PP_0375at 456.366 kb on - strand, within PP_0375at 456.440 kb on + strand, within PP_0375at 456.441 kb on - strand, within PP_0375at 456.455 kb on - strand, within PP_0375at 456.491 kb on + strandat 456.491 kb on + strandat 456.510 kb on + strandat 456.511 kb on - strandat 456.859 kb on - strandat 456.898 kb on + strand, within PP_0376at 456.898 kb on + strand, within PP_0376at 456.898 kb on + strand, within PP_0376at 456.898 kb on + strand, within PP_0376at 456.898 kb on + strand, within PP_0376at 456.898 kb on + strand, within PP_0376at 456.899 kb on - strand, within PP_0376at 456.899 kb on - strand, within PP_0376at 456.899 kb on - strand, within PP_0376at 456.899 kb on - strand, within PP_0376at 456.920 kb on + strand, within PP_0376at 456.920 kb on + strand, within PP_0376at 456.921 kb on - strand, within PP_0376at 456.974 kb on - strand, within PP_0376at 457.041 kb on + strand, within PP_0376at 457.041 kb on + strand, within PP_0376at 457.042 kb on - strand, within PP_0376at 457.045 kb on - strand, within PP_0376at 457.045 kb on - strand, within PP_0376at 457.117 kb on + strand, within PP_0376at 457.118 kb on - strand, within PP_0376at 457.118 kb on - strand, within PP_0376at 457.161 kb on - strand, within PP_0376at 457.185 kb on + strand, within PP_0376at 457.186 kb on - strand, within PP_0376at 457.186 kb on - strand, within PP_0376at 457.492 kb on - strand, within PP_0376at 457.492 kb on - strand, within PP_0376at 457.494 kb on + strand, within PP_0376at 457.495 kb on - strand, within PP_0376at 457.671 kb on + strandat 457.696 kb on - strandat 457.742 kb on - strandat 457.742 kb on - strandat 457.939 kb on + strand, within PP_0377at 457.973 kb on - strand, within PP_0377at 458.005 kb on - strandat 458.012 kb on + strandat 458.027 kb on + strandat 458.027 kb on + strandat 458.028 kb on - strandat 458.119 kb on + strand, within PP_0378at 458.120 kb on - strand, within PP_0378at 458.161 kb on + strand, within PP_0378at 458.161 kb on + strand, within PP_0378at 458.161 kb on + strand, within PP_0378at 458.162 kb on - strand, within PP_0378at 458.187 kb on + strand, within PP_0378at 458.188 kb on - strand, within PP_0378at 458.188 kb on - strand, within PP_0378at 458.256 kb on + strand, within PP_0378at 458.256 kb on + strand, within PP_0378at 458.257 kb on - strand, within PP_0378at 458.430 kb on - strand, within PP_0378at 458.430 kb on - strand, within PP_0378at 458.430 kb on - strand, within PP_0378at 458.622 kb on + strand, within PP_0378at 458.622 kb on + strand, within PP_0378at 458.623 kb on - strand, within PP_0378at 458.625 kb on + strand, within PP_0378at 458.625 kb on + strand, within PP_0378at 458.626 kb on - strand, within PP_0378at 458.694 kb on + strand, within PP_0378at 458.694 kb on + strand, within PP_0378at 458.695 kb on - strand, within PP_0378at 458.712 kb on + strandat 458.712 kb on + strandat 458.712 kb on + strandat 458.713 kb on - strandat 458.713 kb on - strandat 458.713 kb on - strandat 458.715 kb on + strandat 458.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-3-buten-1-ol 0.1 vol% (C)
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455,641 + PP_0375 0.45 -0.7
455,641 + PP_0375 0.45 -0.1
455,642 - PP_0375 0.45 +0.5
455,708 + PP_0375 0.49 +0.1
455,708 + PP_0375 0.49 +0.0
455,708 + PP_0375 0.49 +0.5
455,708 + PP_0375 0.49 +0.3
455,708 + PP_0375 0.49 -0.1
455,709 - PP_0375 0.49 +0.5
455,709 - PP_0375 0.49 +0.2
455,709 - PP_0375 0.49 -0.4
455,750 + PP_0375 0.51 +1.1
455,750 + PP_0375 0.51 +0.1
455,750 + PP_0375 0.51 +0.7
455,750 + PP_0375 0.51 +0.4
455,751 - +2.1
455,773 - PP_0375 0.52 +0.3
455,773 - PP_0375 0.52 +0.7
455,773 - PP_0375 0.52 -0.1
455,773 - PP_0375 0.52 -0.2
455,862 + PP_0375 0.57 +0.4
455,862 + PP_0375 0.57 -0.4
455,863 - PP_0375 0.57 +2.8
455,863 - PP_0375 0.57 +0.5
455,863 - PP_0375 0.57 -0.1
456,166 - PP_0375 0.73 -0.0
456,176 + PP_0375 0.74 +0.5
456,177 - PP_0375 0.74 +0.1
456,177 - PP_0375 0.74 +0.1
456,340 + PP_0375 0.83 +0.2
456,365 + PP_0375 0.84 +0.9
456,365 + PP_0375 0.84 -0.4
456,366 - PP_0375 0.84 +2.1
456,440 + PP_0375 0.88 -0.1
456,441 - PP_0375 0.88 -0.1
456,455 - PP_0375 0.89 -0.1
456,491 + -0.6
456,491 + +0.3
456,510 + -0.9
456,511 - -0.9
456,859 - -0.0
456,898 + PP_0376 0.25 -4.5
456,898 + PP_0376 0.25 -4.0
456,898 + PP_0376 0.25 -2.3
456,898 + PP_0376 0.25 -3.7
456,898 + PP_0376 0.25 -4.1
456,898 + PP_0376 0.25 -4.2
456,899 - PP_0376 0.25 -4.0
456,899 - PP_0376 0.25 -3.1
456,899 - PP_0376 0.25 -3.7
456,899 - PP_0376 0.25 -3.5
456,920 + PP_0376 0.27 -4.0
456,920 + PP_0376 0.27 -3.6
456,921 - PP_0376 0.27 -4.6
456,974 - PP_0376 0.31 -4.3
457,041 + PP_0376 0.37 -3.1
457,041 + PP_0376 0.37 -1.4
457,042 - PP_0376 0.37 -3.8
457,045 - PP_0376 0.38 -3.0
457,045 - PP_0376 0.38 -2.1
457,117 + PP_0376 0.44 -0.5
457,118 - PP_0376 0.44 -3.3
457,118 - PP_0376 0.44 -2.9
457,161 - PP_0376 0.48 -4.1
457,185 + PP_0376 0.50 -3.0
457,186 - PP_0376 0.50 -2.5
457,186 - PP_0376 0.50 -2.5
457,492 - PP_0376 0.77 -4.0
457,492 - PP_0376 0.77 -3.1
457,494 + PP_0376 0.77 -4.1
457,495 - PP_0376 0.77 -3.7
457,671 + -1.6
457,696 - -4.1
457,742 - -2.6
457,742 - -0.1
457,939 + PP_0377 0.68 -3.5
457,973 - PP_0377 0.80 -3.1
458,005 - -1.9
458,012 + -3.3
458,027 + -4.0
458,027 + -4.6
458,028 - -2.0
458,119 + PP_0378 0.13 -3.7
458,120 - PP_0378 0.13 -2.6
458,161 + PP_0378 0.18 -2.9
458,161 + PP_0378 0.18 -4.0
458,161 + PP_0378 0.18 -3.1
458,162 - PP_0378 0.18 -3.0
458,187 + PP_0378 0.22 -2.3
458,188 - PP_0378 0.22 -4.2
458,188 - PP_0378 0.22 -5.1
458,256 + PP_0378 0.31 -4.0
458,256 + PP_0378 0.31 -2.7
458,257 - PP_0378 0.31 -3.9
458,430 - PP_0378 0.54 -3.2
458,430 - PP_0378 0.54 -4.3
458,430 - PP_0378 0.54 -2.0
458,622 + PP_0378 0.79 -3.2
458,622 + PP_0378 0.79 -4.6
458,623 - PP_0378 0.79 -3.0
458,625 + PP_0378 0.79 -2.6
458,625 + PP_0378 0.79 -2.2
458,626 - PP_0378 0.80 -4.5
458,694 + PP_0378 0.89 -4.2
458,694 + PP_0378 0.89 -2.3
458,695 - PP_0378 0.89 -4.9
458,712 + -1.8
458,712 + -4.3
458,712 + -4.1
458,713 - -4.7
458,713 - -2.3
458,713 - -3.8
458,715 + -3.3
458,716 - -3.9

Or see this region's nucleotide sequence