Strain Fitness in Pseudomonas putida KT2440 around PP_0363

Experiment: 3-methyl-3-buten-1-ol 0.1 vol% (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0362 and PP_0363 are separated by 1 nucleotidesPP_0363 and PP_0364 overlap by 8 nucleotidesPP_0364 and PP_0365 overlap by 8 nucleotides PP_0362: PP_0362 - Biotin synthase, at 440,060 to 441,118 _0362 PP_0363: PP_0363 - 8-amino-7-oxononanoate synthase, at 441,120 to 442,292 _0363 PP_0364: PP_0364 - pimeloyl-[acp] methyl ester esterase, at 442,285 to 443,016 _0364 PP_0365: PP_0365 - Malonyl-[acyl-carrier protein] O-methyltransferase, at 443,009 to 443,827 _0365 Position (kb) 441 442 443Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 440.252 kb on + strand, within PP_0362at 440.252 kb on + strand, within PP_0362at 440.253 kb on - strand, within PP_0362at 440.253 kb on - strand, within PP_0362at 440.253 kb on - strand, within PP_0362at 440.273 kb on + strand, within PP_0362at 440.274 kb on - strand, within PP_0362at 440.356 kb on + strand, within PP_0362at 440.356 kb on + strand, within PP_0362at 440.357 kb on - strand, within PP_0362at 440.411 kb on + strand, within PP_0362at 440.411 kb on + strand, within PP_0362at 440.411 kb on + strand, within PP_0362at 440.412 kb on - strand, within PP_0362at 440.412 kb on - strand, within PP_0362at 440.412 kb on - strand, within PP_0362at 440.412 kb on - strand, within PP_0362at 440.522 kb on + strand, within PP_0362at 440.523 kb on - strand, within PP_0362at 440.525 kb on + strand, within PP_0362at 440.525 kb on + strand, within PP_0362at 440.525 kb on + strand, within PP_0362at 440.525 kb on + strand, within PP_0362at 440.525 kb on + strand, within PP_0362at 440.525 kb on + strand, within PP_0362at 440.526 kb on - strand, within PP_0362at 440.558 kb on + strand, within PP_0362at 440.581 kb on + strand, within PP_0362at 440.581 kb on + strand, within PP_0362at 440.582 kb on - strand, within PP_0362at 440.582 kb on - strand, within PP_0362at 440.585 kb on + strand, within PP_0362at 440.586 kb on - strand, within PP_0362at 440.586 kb on - strand, within PP_0362at 440.612 kb on + strand, within PP_0362at 440.612 kb on + strand, within PP_0362at 440.612 kb on + strand, within PP_0362at 440.613 kb on - strand, within PP_0362at 440.613 kb on - strand, within PP_0362at 440.613 kb on - strand, within PP_0362at 440.806 kb on + strand, within PP_0362at 440.807 kb on - strand, within PP_0362at 440.813 kb on - strand, within PP_0362at 440.813 kb on - strand, within PP_0362at 440.933 kb on + strand, within PP_0362at 441.098 kb on + strandat 441.099 kb on - strandat 441.258 kb on + strand, within PP_0363at 441.258 kb on + strand, within PP_0363at 441.259 kb on - strand, within PP_0363at 441.349 kb on + strand, within PP_0363at 441.350 kb on - strand, within PP_0363at 441.350 kb on - strand, within PP_0363at 441.438 kb on + strand, within PP_0363at 441.438 kb on + strand, within PP_0363at 441.438 kb on + strand, within PP_0363at 441.439 kb on - strand, within PP_0363at 441.439 kb on - strand, within PP_0363at 441.439 kb on - strand, within PP_0363at 441.439 kb on - strand, within PP_0363at 441.440 kb on + strand, within PP_0363at 441.440 kb on + strand, within PP_0363at 441.441 kb on - strand, within PP_0363at 441.618 kb on - strand, within PP_0363at 441.799 kb on + strand, within PP_0363at 441.799 kb on + strand, within PP_0363at 441.799 kb on + strand, within PP_0363at 441.800 kb on - strand, within PP_0363at 441.886 kb on + strand, within PP_0363at 441.886 kb on + strand, within PP_0363at 441.887 kb on - strand, within PP_0363at 441.903 kb on + strand, within PP_0363at 441.903 kb on + strand, within PP_0363at 441.905 kb on + strand, within PP_0363at 441.905 kb on + strand, within PP_0363at 441.905 kb on + strandat 441.905 kb on + strand, within PP_0363at 441.905 kb on + strand, within PP_0363at 441.905 kb on + strand, within PP_0363at 441.906 kb on - strand, within PP_0363at 441.906 kb on - strand, within PP_0363at 441.906 kb on - strand, within PP_0363at 441.906 kb on - strand, within PP_0363at 441.909 kb on + strand, within PP_0363at 441.909 kb on + strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 441.910 kb on - strand, within PP_0363at 442.237 kb on + strandat 442.238 kb on - strandat 442.238 kb on - strandat 442.238 kb on - strandat 442.290 kb on + strandat 442.290 kb on + strandat 442.291 kb on - strandat 442.304 kb on + strandat 442.304 kb on + strandat 442.305 kb on - strandat 442.305 kb on - strandat 442.305 kb on - strandat 442.385 kb on + strand, within PP_0364at 442.650 kb on + strand, within PP_0364at 442.650 kb on + strand, within PP_0364at 442.650 kb on + strand, within PP_0364at 442.651 kb on - strand, within PP_0364at 442.651 kb on - strand, within PP_0364at 442.651 kb on - strand, within PP_0364at 442.651 kb on - strand, within PP_0364at 442.660 kb on - strand, within PP_0364at 442.677 kb on + strand, within PP_0364at 442.677 kb on + strand, within PP_0364at 442.678 kb on - strand, within PP_0364at 442.759 kb on + strand, within PP_0364at 442.759 kb on + strand, within PP_0364at 442.788 kb on + strand, within PP_0364at 442.819 kb on + strand, within PP_0364at 442.819 kb on + strand, within PP_0364at 442.862 kb on + strand, within PP_0364at 442.863 kb on - strand, within PP_0364at 442.911 kb on - strand, within PP_0364at 442.911 kb on - strand, within PP_0364at 442.957 kb on + strandat 443.097 kb on - strand, within PP_0365at 443.127 kb on + strand, within PP_0365

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-methyl-3-buten-1-ol 0.1 vol% (C)
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440,252 + PP_0362 0.18 -2.8
440,252 + PP_0362 0.18 -0.8
440,253 - PP_0362 0.18 -2.3
440,253 - PP_0362 0.18 -3.2
440,253 - PP_0362 0.18 -3.3
440,273 + PP_0362 0.20 -4.3
440,274 - PP_0362 0.20 -2.7
440,356 + PP_0362 0.28 -4.6
440,356 + PP_0362 0.28 -2.3
440,357 - PP_0362 0.28 -1.4
440,411 + PP_0362 0.33 -2.0
440,411 + PP_0362 0.33 -1.0
440,411 + PP_0362 0.33 -4.2
440,412 - PP_0362 0.33 -3.3
440,412 - PP_0362 0.33 -5.2
440,412 - PP_0362 0.33 -2.2
440,412 - PP_0362 0.33 -3.8
440,522 + PP_0362 0.44 -2.4
440,523 - PP_0362 0.44 -3.0
440,525 + PP_0362 0.44 -2.4
440,525 + PP_0362 0.44 -4.6
440,525 + PP_0362 0.44 -2.6
440,525 + PP_0362 0.44 -2.9
440,525 + PP_0362 0.44 -5.0
440,525 + PP_0362 0.44 -2.3
440,526 - PP_0362 0.44 -3.0
440,558 + PP_0362 0.47 -2.2
440,581 + PP_0362 0.49 -1.3
440,581 + PP_0362 0.49 -2.6
440,582 - PP_0362 0.49 -2.1
440,582 - PP_0362 0.49 -3.5
440,585 + PP_0362 0.50 -1.9
440,586 - PP_0362 0.50 -4.2
440,586 - PP_0362 0.50 -4.9
440,612 + PP_0362 0.52 -1.7
440,612 + PP_0362 0.52 -2.2
440,612 + PP_0362 0.52 -3.9
440,613 - PP_0362 0.52 -1.9
440,613 - PP_0362 0.52 -4.5
440,613 - PP_0362 0.52 -2.3
440,806 + PP_0362 0.70 -2.6
440,807 - PP_0362 0.71 -3.5
440,813 - PP_0362 0.71 -1.8
440,813 - PP_0362 0.71 -3.4
440,933 + PP_0362 0.82 -2.8
441,098 + +0.0
441,099 - -2.1
441,258 + PP_0363 0.12 -1.3
441,258 + PP_0363 0.12 -1.0
441,259 - PP_0363 0.12 -1.4
441,349 + PP_0363 0.20 -1.8
441,350 - PP_0363 0.20 -2.6
441,350 - PP_0363 0.20 -0.5
441,438 + PP_0363 0.27 -2.1
441,438 + PP_0363 0.27 -1.1
441,438 + PP_0363 0.27 -1.6
441,439 - PP_0363 0.27 -2.1
441,439 - PP_0363 0.27 -0.7
441,439 - PP_0363 0.27 -2.7
441,439 - PP_0363 0.27 -1.2
441,440 + PP_0363 0.27 -1.3
441,440 + PP_0363 0.27 -1.5
441,441 - PP_0363 0.27 -1.1
441,618 - PP_0363 0.42 -1.7
441,799 + PP_0363 0.58 -1.6
441,799 + PP_0363 0.58 -1.3
441,799 + PP_0363 0.58 -0.9
441,800 - PP_0363 0.58 -2.0
441,886 + PP_0363 0.65 -1.6
441,886 + PP_0363 0.65 -0.8
441,887 - PP_0363 0.65 -2.1
441,903 + PP_0363 0.67 -1.7
441,903 + PP_0363 0.67 -1.6
441,905 + PP_0363 0.67 -0.2
441,905 + PP_0363 0.67 -2.0
441,905 + -0.6
441,905 + PP_0363 0.67 -1.3
441,905 + PP_0363 0.67 -1.3
441,905 + PP_0363 0.67 -1.7
441,906 - PP_0363 0.67 -0.2
441,906 - PP_0363 0.67 -0.7
441,906 - PP_0363 0.67 -1.2
441,906 - PP_0363 0.67 -0.7
441,909 + PP_0363 0.67 -0.7
441,909 + PP_0363 0.67 -1.6
441,910 - PP_0363 0.67 -0.6
441,910 - PP_0363 0.67 -2.1
441,910 - PP_0363 0.67 -1.5
441,910 - PP_0363 0.67 -2.3
441,910 - PP_0363 0.67 +0.2
441,910 - PP_0363 0.67 -1.0
441,910 - PP_0363 0.67 -1.8
442,237 + -0.9
442,238 - -1.5
442,238 - -1.7
442,238 - -1.1
442,290 + -0.4
442,290 + -0.6
442,291 - -0.0
442,304 + -1.0
442,304 + -1.6
442,305 - -0.6
442,305 - -0.6
442,305 - -1.9
442,385 + PP_0364 0.14 -2.0
442,650 + PP_0364 0.50 -1.5
442,650 + PP_0364 0.50 -1.5
442,650 + PP_0364 0.50 -1.6
442,651 - PP_0364 0.50 -0.3
442,651 - PP_0364 0.50 -1.6
442,651 - PP_0364 0.50 -1.0
442,651 - PP_0364 0.50 -2.5
442,660 - PP_0364 0.51 -1.8
442,677 + PP_0364 0.54 -1.0
442,677 + PP_0364 0.54 -0.6
442,678 - PP_0364 0.54 -2.0
442,759 + PP_0364 0.65 -1.3
442,759 + PP_0364 0.65 -0.7
442,788 + PP_0364 0.69 +1.5
442,819 + PP_0364 0.73 -2.3
442,819 + PP_0364 0.73 -2.6
442,862 + PP_0364 0.79 -1.3
442,863 - PP_0364 0.79 -1.0
442,911 - PP_0364 0.86 -0.9
442,911 - PP_0364 0.86 -1.9
442,957 + -1.1
443,097 - PP_0365 0.11 -2.6
443,127 + PP_0365 0.14 -1.1

Or see this region's nucleotide sequence