Strain Fitness in Pseudomonas putida KT2440 around PP_0558

Experiment: Valerolactam 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0557 and PP_0558 are separated by 90 nucleotidesPP_0558 and PP_0559 are separated by 17 nucleotidesPP_0559 and PP_0560 are separated by 99 nucleotides PP_0557: PP_0557 - Acetoin catabolism regulatory protein, at 646,378 to 648,231 _0557 PP_0558: PP_0558 - acetyl-CoA carboxylase - biotin carboxylase subunit, at 648,322 to 649,677 _0558 PP_0559: PP_0559 - acetyl-CoA carboxylase - biotin carboxyl carrier subunit, at 649,695 to 650,156 _0559 PP_0560: PP_0560 - 3-dehydroquinate dehydratase 1, type II, at 650,256 to 650,711 _0560 Position (kb) 648 649 650Strain fitness (log2 ratio) -1 0 1 2at 647.788 kb on + strand, within PP_0557at 647.788 kb on + strand, within PP_0557at 647.788 kb on + strand, within PP_0557at 647.788 kb on + strand, within PP_0557at 647.987 kb on - strand, within PP_0557at 648.305 kb on + strandat 648.315 kb on + strandat 648.315 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Valerolactam 10 mM (C)
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647,788 + PP_0557 0.76 -1.5
647,788 + PP_0557 0.76 +1.2
647,788 + PP_0557 0.76 -1.3
647,788 + PP_0557 0.76 +1.3
647,987 - PP_0557 0.87 +0.6
648,305 + +2.0
648,315 + +0.9
648,315 + -0.4

Or see this region's nucleotide sequence