Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3654

Experiment: KB with Helenine 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_3653 and Psyr_3654 are separated by 27 nucleotidesPsyr_3654 and Psyr_3655 are separated by 31 nucleotides Psyr_3653: Psyr_3653 - GGDEF domain protein, at 4,338,567 to 4,339,493 _3653 Psyr_3654: Psyr_3654 - conserved hypothetical protein, at 4,339,521 to 4,340,303 _3654 Psyr_3655: Psyr_3655 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 4,340,335 to 4,342,797 _3655 Position (kb) 4339 4340 4341Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4338.546 kb on + strandat 4338.546 kb on + strandat 4338.546 kb on + strandat 4338.546 kb on + strandat 4338.546 kb on + strandat 4338.546 kb on + strandat 4338.546 kb on + strandat 4338.546 kb on + strandat 4338.547 kb on - strandat 4338.547 kb on - strandat 4338.547 kb on - strandat 4338.547 kb on - strandat 4338.547 kb on - strandat 4338.547 kb on - strandat 4338.684 kb on + strand, within Psyr_3653at 4338.754 kb on + strand, within Psyr_3653at 4338.754 kb on + strand, within Psyr_3653at 4338.755 kb on - strand, within Psyr_3653at 4338.755 kb on - strand, within Psyr_3653at 4338.755 kb on - strand, within Psyr_3653at 4338.787 kb on - strand, within Psyr_3653at 4338.787 kb on - strand, within Psyr_3653at 4338.787 kb on - strand, within Psyr_3653at 4339.152 kb on + strand, within Psyr_3653at 4339.152 kb on + strand, within Psyr_3653at 4339.152 kb on + strand, within Psyr_3653at 4339.152 kb on + strand, within Psyr_3653at 4339.153 kb on - strand, within Psyr_3653at 4339.220 kb on + strand, within Psyr_3653at 4339.221 kb on - strand, within Psyr_3653at 4339.221 kb on - strand, within Psyr_3653at 4339.446 kb on + strandat 4339.446 kb on + strandat 4339.447 kb on - strandat 4339.447 kb on - strandat 4339.594 kb on + strandat 4339.594 kb on + strandat 4339.594 kb on + strandat 4339.594 kb on + strandat 4339.595 kb on - strandat 4339.595 kb on - strandat 4339.595 kb on - strandat 4339.595 kb on - strandat 4339.600 kb on + strand, within Psyr_3654at 4339.600 kb on + strand, within Psyr_3654at 4339.600 kb on + strand, within Psyr_3654at 4339.600 kb on + strand, within Psyr_3654at 4339.600 kb on + strand, within Psyr_3654at 4339.600 kb on + strand, within Psyr_3654at 4339.600 kb on + strand, within Psyr_3654at 4339.601 kb on - strand, within Psyr_3654at 4339.601 kb on - strand, within Psyr_3654at 4339.601 kb on - strand, within Psyr_3654at 4339.601 kb on - strand, within Psyr_3654at 4339.601 kb on - strand, within Psyr_3654at 4339.606 kb on + strand, within Psyr_3654at 4339.673 kb on + strand, within Psyr_3654at 4339.673 kb on + strand, within Psyr_3654at 4339.673 kb on + strand, within Psyr_3654at 4339.673 kb on + strand, within Psyr_3654at 4339.674 kb on - strand, within Psyr_3654at 4339.674 kb on - strand, within Psyr_3654at 4339.674 kb on - strand, within Psyr_3654at 4339.674 kb on - strand, within Psyr_3654at 4339.674 kb on - strand, within Psyr_3654at 4339.674 kb on - strand, within Psyr_3654at 4339.674 kb on - strand, within Psyr_3654at 4339.715 kb on - strand, within Psyr_3654at 4339.832 kb on + strand, within Psyr_3654at 4339.837 kb on + strand, within Psyr_3654at 4339.837 kb on + strand, within Psyr_3654at 4339.837 kb on + strand, within Psyr_3654at 4339.837 kb on + strand, within Psyr_3654at 4339.837 kb on + strand, within Psyr_3654at 4339.837 kb on + strand, within Psyr_3654at 4339.837 kb on + strand, within Psyr_3654at 4339.837 kb on + strand, within Psyr_3654at 4339.837 kb on + strand, within Psyr_3654at 4339.838 kb on - strand, within Psyr_3654at 4339.838 kb on - strand, within Psyr_3654at 4339.838 kb on - strand, within Psyr_3654at 4339.838 kb on - strand, within Psyr_3654at 4339.838 kb on - strand, within Psyr_3654at 4339.838 kb on - strand, within Psyr_3654at 4339.838 kb on - strand, within Psyr_3654at 4339.838 kb on - strand, within Psyr_3654at 4340.013 kb on - strand, within Psyr_3654at 4340.092 kb on + strand, within Psyr_3654at 4340.092 kb on + strand, within Psyr_3654at 4340.092 kb on + strand, within Psyr_3654at 4340.092 kb on + strand, within Psyr_3654at 4340.092 kb on + strand, within Psyr_3654at 4340.092 kb on + strand, within Psyr_3654at 4340.093 kb on - strand, within Psyr_3654at 4340.093 kb on - strand, within Psyr_3654at 4340.093 kb on - strand, within Psyr_3654at 4340.093 kb on - strand, within Psyr_3654at 4340.093 kb on - strand, within Psyr_3654at 4340.093 kb on - strand, within Psyr_3654at 4340.093 kb on - strand, within Psyr_3654at 4340.182 kb on + strand, within Psyr_3654at 4340.182 kb on + strand, within Psyr_3654at 4340.183 kb on - strand, within Psyr_3654at 4340.183 kb on - strand, within Psyr_3654at 4340.286 kb on - strandat 4340.317 kb on + strandat 4340.318 kb on - strandat 4340.391 kb on + strandat 4340.391 kb on + strandat 4340.392 kb on - strandat 4340.393 kb on + strandat 4340.393 kb on + strandat 4340.394 kb on - strandat 4340.435 kb on + strandat 4340.435 kb on + strandat 4340.436 kb on - strandat 4340.498 kb on + strandat 4340.499 kb on - strandat 4340.508 kb on + strandat 4340.509 kb on - strandat 4340.509 kb on - strandat 4340.538 kb on + strandat 4340.539 kb on - strandat 4340.556 kb on + strandat 4340.829 kb on + strand, within Psyr_3655at 4340.829 kb on + strand, within Psyr_3655at 4340.829 kb on + strand, within Psyr_3655at 4340.829 kb on + strand, within Psyr_3655at 4340.829 kb on + strand, within Psyr_3655at 4340.862 kb on + strand, within Psyr_3655at 4340.869 kb on + strand, within Psyr_3655at 4340.869 kb on + strand, within Psyr_3655at 4340.869 kb on + strand, within Psyr_3655at 4340.869 kb on + strand, within Psyr_3655at 4340.869 kb on + strand, within Psyr_3655at 4340.869 kb on + strand, within Psyr_3655at 4340.869 kb on + strand, within Psyr_3655at 4340.870 kb on - strand, within Psyr_3655at 4340.870 kb on - strand, within Psyr_3655at 4341.055 kb on + strand, within Psyr_3655at 4341.055 kb on + strand, within Psyr_3655at 4341.056 kb on - strand, within Psyr_3655at 4341.098 kb on + strand, within Psyr_3655at 4341.143 kb on - strand, within Psyr_3655at 4341.194 kb on + strand, within Psyr_3655at 4341.194 kb on + strand, within Psyr_3655at 4341.195 kb on - strand, within Psyr_3655at 4341.195 kb on - strand, within Psyr_3655at 4341.231 kb on + strand, within Psyr_3655at 4341.231 kb on + strand, within Psyr_3655at 4341.231 kb on + strand, within Psyr_3655at 4341.231 kb on + strand, within Psyr_3655at 4341.232 kb on - strand, within Psyr_3655at 4341.232 kb on - strand, within Psyr_3655at 4341.233 kb on + strand, within Psyr_3655at 4341.233 kb on + strand, within Psyr_3655at 4341.233 kb on + strand, within Psyr_3655at 4341.233 kb on + strand, within Psyr_3655at 4341.233 kb on + strand, within Psyr_3655at 4341.233 kb on + strand, within Psyr_3655at 4341.233 kb on + strand, within Psyr_3655at 4341.234 kb on - strand, within Psyr_3655at 4341.234 kb on - strand, within Psyr_3655at 4341.234 kb on - strand, within Psyr_3655at 4341.234 kb on - strand, within Psyr_3655at 4341.234 kb on - strand, within Psyr_3655at 4341.234 kb on - strand, within Psyr_3655at 4341.234 kb on - strand, within Psyr_3655at 4341.234 kb on - strand, within Psyr_3655at 4341.295 kb on + strand, within Psyr_3655at 4341.296 kb on - strand, within Psyr_3655at 4341.296 kb on - strand, within Psyr_3655

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Helenine 10 mM
remove
4,338,546 + +0.6
4,338,546 + +0.5
4,338,546 + +1.3
4,338,546 + -1.2
4,338,546 + -0.8
4,338,546 + +2.6
4,338,546 + -0.5
4,338,546 + +1.0
4,338,547 - +2.5
4,338,547 - +0.1
4,338,547 - -2.0
4,338,547 - -2.4
4,338,547 - -1.9
4,338,547 - -0.4
4,338,684 + Psyr_3653 0.13 -1.2
4,338,754 + Psyr_3653 0.20 -1.0
4,338,754 + Psyr_3653 0.20 +1.2
4,338,755 - Psyr_3653 0.20 +0.1
4,338,755 - Psyr_3653 0.20 -0.8
4,338,755 - Psyr_3653 0.20 -0.8
4,338,787 - Psyr_3653 0.24 -0.4
4,338,787 - Psyr_3653 0.24 -0.9
4,338,787 - Psyr_3653 0.24 +0.0
4,339,152 + Psyr_3653 0.63 -0.1
4,339,152 + Psyr_3653 0.63 -0.2
4,339,152 + Psyr_3653 0.63 +0.3
4,339,152 + Psyr_3653 0.63 -0.1
4,339,153 - Psyr_3653 0.63 +0.3
4,339,220 + Psyr_3653 0.70 +0.3
4,339,221 - Psyr_3653 0.71 +0.9
4,339,221 - Psyr_3653 0.71 +0.1
4,339,446 + +0.4
4,339,446 + -2.2
4,339,447 - +0.8
4,339,447 - +0.4
4,339,594 + -0.5
4,339,594 + -0.7
4,339,594 + -1.0
4,339,594 + +0.3
4,339,595 - -2.1
4,339,595 - +1.3
4,339,595 - +0.3
4,339,595 - +0.2
4,339,600 + Psyr_3654 0.10 +3.2
4,339,600 + Psyr_3654 0.10 -0.6
4,339,600 + Psyr_3654 0.10 -1.3
4,339,600 + Psyr_3654 0.10 -0.2
4,339,600 + Psyr_3654 0.10 +0.4
4,339,600 + Psyr_3654 0.10 +0.3
4,339,600 + Psyr_3654 0.10 -0.3
4,339,601 - Psyr_3654 0.10 -1.0
4,339,601 - Psyr_3654 0.10 -0.7
4,339,601 - Psyr_3654 0.10 -2.1
4,339,601 - Psyr_3654 0.10 +1.1
4,339,601 - Psyr_3654 0.10 -1.4
4,339,606 + Psyr_3654 0.11 -1.1
4,339,673 + Psyr_3654 0.19 -2.2
4,339,673 + Psyr_3654 0.19 -1.1
4,339,673 + Psyr_3654 0.19 -0.7
4,339,673 + Psyr_3654 0.19 +3.1
4,339,674 - Psyr_3654 0.20 +3.4
4,339,674 - Psyr_3654 0.20 +1.2
4,339,674 - Psyr_3654 0.20 -1.9
4,339,674 - Psyr_3654 0.20 -0.9
4,339,674 - Psyr_3654 0.20 -1.4
4,339,674 - Psyr_3654 0.20 +1.8
4,339,674 - Psyr_3654 0.20 -0.7
4,339,715 - Psyr_3654 0.25 -0.2
4,339,832 + Psyr_3654 0.40 +0.6
4,339,837 + Psyr_3654 0.40 -0.4
4,339,837 + Psyr_3654 0.40 -1.7
4,339,837 + Psyr_3654 0.40 -1.3
4,339,837 + Psyr_3654 0.40 +0.3
4,339,837 + Psyr_3654 0.40 -0.2
4,339,837 + Psyr_3654 0.40 +0.4
4,339,837 + Psyr_3654 0.40 -0.8
4,339,837 + Psyr_3654 0.40 +0.2
4,339,837 + Psyr_3654 0.40 -1.2
4,339,838 - Psyr_3654 0.40 -1.1
4,339,838 - Psyr_3654 0.40 +1.6
4,339,838 - Psyr_3654 0.40 +0.7
4,339,838 - Psyr_3654 0.40 -0.1
4,339,838 - Psyr_3654 0.40 -0.3
4,339,838 - Psyr_3654 0.40 -0.9
4,339,838 - Psyr_3654 0.40 +0.5
4,339,838 - Psyr_3654 0.40 -0.1
4,340,013 - Psyr_3654 0.63 -0.2
4,340,092 + Psyr_3654 0.73 -0.7
4,340,092 + Psyr_3654 0.73 -0.4
4,340,092 + Psyr_3654 0.73 -1.1
4,340,092 + Psyr_3654 0.73 +2.5
4,340,092 + Psyr_3654 0.73 -0.5
4,340,092 + Psyr_3654 0.73 -0.8
4,340,093 - Psyr_3654 0.73 -0.5
4,340,093 - Psyr_3654 0.73 -1.3
4,340,093 - Psyr_3654 0.73 -0.2
4,340,093 - Psyr_3654 0.73 +0.4
4,340,093 - Psyr_3654 0.73 +0.2
4,340,093 - Psyr_3654 0.73 -0.4
4,340,093 - Psyr_3654 0.73 +1.1
4,340,182 + Psyr_3654 0.84 +0.7
4,340,182 + Psyr_3654 0.84 +2.5
4,340,183 - Psyr_3654 0.85 -0.0
4,340,183 - Psyr_3654 0.85 +0.1
4,340,286 - -0.0
4,340,317 + +0.2
4,340,318 - -0.4
4,340,391 + +0.5
4,340,391 + -0.1
4,340,392 - +0.5
4,340,393 + +0.9
4,340,393 + -0.4
4,340,394 - -0.7
4,340,435 + -1.4
4,340,435 + -1.1
4,340,436 - +0.1
4,340,498 + -0.4
4,340,499 - +3.2
4,340,508 + +0.6
4,340,509 - -0.1
4,340,509 - +0.1
4,340,538 + +0.7
4,340,539 - +0.2
4,340,556 + +0.0
4,340,829 + Psyr_3655 0.20 -1.0
4,340,829 + Psyr_3655 0.20 +0.0
4,340,829 + Psyr_3655 0.20 +0.1
4,340,829 + Psyr_3655 0.20 -0.8
4,340,829 + Psyr_3655 0.20 -0.2
4,340,862 + Psyr_3655 0.21 -0.4
4,340,869 + Psyr_3655 0.22 -0.9
4,340,869 + Psyr_3655 0.22 +0.1
4,340,869 + Psyr_3655 0.22 -0.3
4,340,869 + Psyr_3655 0.22 +0.0
4,340,869 + Psyr_3655 0.22 -1.6
4,340,869 + Psyr_3655 0.22 +1.2
4,340,869 + Psyr_3655 0.22 +2.2
4,340,870 - Psyr_3655 0.22 +1.6
4,340,870 - Psyr_3655 0.22 -0.2
4,341,055 + Psyr_3655 0.29 +1.4
4,341,055 + Psyr_3655 0.29 -0.4
4,341,056 - Psyr_3655 0.29 -0.7
4,341,098 + Psyr_3655 0.31 -1.1
4,341,143 - Psyr_3655 0.33 +0.6
4,341,194 + Psyr_3655 0.35 -0.1
4,341,194 + Psyr_3655 0.35 +0.2
4,341,195 - Psyr_3655 0.35 -0.3
4,341,195 - Psyr_3655 0.35 -0.5
4,341,231 + Psyr_3655 0.36 -0.7
4,341,231 + Psyr_3655 0.36 +1.7
4,341,231 + Psyr_3655 0.36 +1.0
4,341,231 + Psyr_3655 0.36 -0.7
4,341,232 - Psyr_3655 0.36 -0.2
4,341,232 - Psyr_3655 0.36 -0.7
4,341,233 + Psyr_3655 0.36 +1.3
4,341,233 + Psyr_3655 0.36 +1.7
4,341,233 + Psyr_3655 0.36 +0.6
4,341,233 + Psyr_3655 0.36 +0.4
4,341,233 + Psyr_3655 0.36 -0.1
4,341,233 + Psyr_3655 0.36 -1.3
4,341,233 + Psyr_3655 0.36 +2.5
4,341,234 - Psyr_3655 0.37 +1.4
4,341,234 - Psyr_3655 0.37 -0.1
4,341,234 - Psyr_3655 0.37 -0.8
4,341,234 - Psyr_3655 0.37 +0.9
4,341,234 - Psyr_3655 0.37 +0.2
4,341,234 - Psyr_3655 0.37 -0.4
4,341,234 - Psyr_3655 0.37 -0.6
4,341,234 - Psyr_3655 0.37 +2.2
4,341,295 + Psyr_3655 0.39 +1.2
4,341,296 - Psyr_3655 0.39 -0.4
4,341,296 - Psyr_3655 0.39 +0.9

Or see this region's nucleotide sequence