Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2433

Experiment: KB with Helenine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2432 and Psyr_2433 are separated by 168 nucleotidesPsyr_2433 and Psyr_2434 are separated by 84 nucleotides Psyr_2432: Psyr_2432 - diguanylate cyclase/phosphodiesterase, at 2,814,290 to 2,817,199 _2432 Psyr_2433: Psyr_2433 - conserved hypothetical protein, at 2,817,368 to 2,817,922 _2433 Psyr_2434: Psyr_2434 - Carbohydrate kinase, PfkB, at 2,818,007 to 2,818,945 _2434 Position (kb) 2817 2818Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2816.473 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.642 kb on + strand, within Psyr_2432at 2816.643 kb on - strand, within Psyr_2432at 2816.643 kb on - strand, within Psyr_2432at 2816.723 kb on + strand, within Psyr_2432at 2816.723 kb on + strand, within Psyr_2432at 2816.723 kb on + strand, within Psyr_2432at 2816.757 kb on + strand, within Psyr_2432at 2816.757 kb on + strand, within Psyr_2432at 2816.758 kb on - strand, within Psyr_2432at 2816.930 kb on + strandat 2816.930 kb on + strandat 2816.930 kb on + strandat 2816.931 kb on - strandat 2816.931 kb on - strandat 2817.137 kb on + strandat 2817.138 kb on - strandat 2817.138 kb on - strandat 2817.138 kb on - strandat 2817.138 kb on - strandat 2817.138 kb on - strandat 2817.138 kb on - strandat 2817.138 kb on - strandat 2817.305 kb on - strandat 2817.607 kb on + strand, within Psyr_2433at 2817.608 kb on - strand, within Psyr_2433at 2817.608 kb on - strand, within Psyr_2433at 2817.788 kb on + strand, within Psyr_2433at 2817.789 kb on - strand, within Psyr_2433at 2817.910 kb on + strandat 2817.985 kb on + strandat 2817.985 kb on + strandat 2817.986 kb on - strandat 2818.183 kb on + strand, within Psyr_2434at 2818.648 kb on - strand, within Psyr_2434at 2818.770 kb on + strand, within Psyr_2434

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Helenine 10 mM
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2,816,473 + Psyr_2432 0.75 -0.1
2,816,642 + Psyr_2432 0.81 +2.2
2,816,642 + Psyr_2432 0.81 -3.5
2,816,642 + Psyr_2432 0.81 -0.3
2,816,642 + Psyr_2432 0.81 +1.1
2,816,642 + Psyr_2432 0.81 -0.0
2,816,642 + Psyr_2432 0.81 +0.0
2,816,642 + Psyr_2432 0.81 +1.5
2,816,642 + Psyr_2432 0.81 -1.2
2,816,642 + Psyr_2432 0.81 +0.4
2,816,642 + Psyr_2432 0.81 +0.4
2,816,642 + Psyr_2432 0.81 +0.3
2,816,642 + Psyr_2432 0.81 +0.4
2,816,643 - Psyr_2432 0.81 -1.5
2,816,643 - Psyr_2432 0.81 +1.1
2,816,723 + Psyr_2432 0.84 -0.5
2,816,723 + Psyr_2432 0.84 +1.1
2,816,723 + Psyr_2432 0.84 +0.6
2,816,757 + Psyr_2432 0.85 +0.8
2,816,757 + Psyr_2432 0.85 -2.4
2,816,758 - Psyr_2432 0.85 -0.3
2,816,930 + +0.9
2,816,930 + -0.2
2,816,930 + +1.5
2,816,931 - +1.9
2,816,931 - -0.9
2,817,137 + -0.1
2,817,138 - +2.5
2,817,138 - +0.2
2,817,138 - -2.6
2,817,138 - -0.4
2,817,138 - -1.2
2,817,138 - -0.9
2,817,138 - +0.7
2,817,305 - -1.1
2,817,607 + Psyr_2433 0.43 +1.9
2,817,608 - Psyr_2433 0.43 -2.6
2,817,608 - Psyr_2433 0.43 -0.7
2,817,788 + Psyr_2433 0.76 +0.9
2,817,789 - Psyr_2433 0.76 -0.9
2,817,910 + -1.9
2,817,985 + -0.1
2,817,985 + +0.4
2,817,986 - +0.8
2,818,183 + Psyr_2434 0.19 +0.1
2,818,648 - Psyr_2434 0.68 +0.8
2,818,770 + Psyr_2434 0.81 +0.3

Or see this region's nucleotide sequence