Strain Fitness in Pseudomonas putida KT2440 around PP_5484

Experiment: 5-Aminovaleric 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Aminovaleric 10 mM (C)
2,169,725	+				-0.1
2,169,725	+				-1.4
2,169,725	+				+0.4
2,169,725	+				+0.4
2,169,726	-				+1.0
2,169,726	-				-1.7
2,169,726	-				+0.6
2,169,726	-				-1.5
2,169,742	-				-1.4
2,169,742	-				+1.2
2,169,857	+		PP_1923	0.15	-0.1
2,169,857	+		PP_1923	0.15	-0.5
2,169,857	+		PP_1923	0.15	+0.0
2,169,857	+		PP_1923	0.15	-0.2
2,169,858	-				-0.2
2,169,858	-		PP_1923	0.15	-0.3
2,169,858	-		PP_1923	0.15	+0.4
2,169,858	-		PP_1923	0.15	-2.2
2,169,858	-		PP_1923	0.15	-3.1
2,169,858	-		PP_1923	0.15	+0.8
2,169,858	-		PP_1923	0.15	-0.7
2,169,858	-		PP_1923	0.15	+1.0
2,169,858	-		PP_1923	0.15	+1.2
2,169,862	+		PP_1923	0.15	-2.7
2,169,862	+		PP_1923	0.15	-0.4
2,169,862	+		PP_1923	0.15	-0.2
2,169,863	-		PP_1923	0.16	-0.1
2,169,863	-		PP_1923	0.16	+0.4
2,169,863	-		PP_1923	0.16	-2.5
2,169,863	-		PP_1923	0.16	-1.0
2,169,863	-		PP_1923	0.16	+0.3
2,169,863	-		PP_1923	0.16	+0.8
2,169,863	-		PP_1923	0.16	+0.7
2,169,863	-		PP_1923	0.16	+1.2
2,169,864	+		PP_1923	0.16	+0.2
2,169,864	+		PP_1923	0.16	-1.2
2,169,865	-		PP_1923	0.16	-1.5
2,169,865	-		PP_1923	0.16	+0.7
2,169,865	-		PP_1923	0.16	-0.1
2,169,865	-		PP_1923	0.16	-0.4
2,169,865	-		PP_1923	0.16	+0.6
2,169,865	-		PP_1923	0.16	-4.0
2,169,865	-		PP_1923	0.16	+0.7
2,169,865	-		PP_1923	0.16	-0.5
2,169,866	+		PP_1923	0.16	+1.3
2,169,866	+		PP_1923	0.16	+0.7
2,169,866	+		PP_1923	0.16	-0.2
2,169,867	-		PP_1923	0.16	-0.8
2,169,867	-		PP_1923	0.16	-0.8
2,169,867	-		PP_1923	0.16	-1.1
2,169,867	-		PP_1923	0.16	-0.7
2,169,867	-		PP_1923	0.16	-0.2
2,169,867	-		PP_1923	0.16	-1.5
2,169,867	-		PP_1923	0.16	+0.3
2,169,867	-		PP_1923	0.16	-2.5
2,169,897	-		PP_1923	0.20	+0.3
2,169,921	+		PP_1923	0.23	-1.2
2,169,922	-		PP_1923	0.23	+0.8
2,169,922	-				-0.6
2,169,928	-		PP_1923	0.24	-0.3
2,169,998	+		PP_1923	0.33	+0.9
2,169,998	+		PP_1923	0.33	+0.7
2,170,032	-		PP_1923	0.37	-0.4
2,170,050	+		PP_1923	0.39	-0.5
2,170,050	+		PP_1923	0.39	+0.5
2,170,051	-		PP_1923	0.39	-0.2
2,170,051	-		PP_1923	0.39	-0.4
2,170,054	+		PP_1923	0.40	+0.2
2,170,054	+		PP_1923	0.40	+0.3
2,170,054	+		PP_1923	0.40	+0.1
2,170,054	+		PP_1923	0.40	+0.5
2,170,055	-		PP_1923	0.40	-0.5
2,170,055	-		PP_1923	0.40	-0.2
2,170,055	-		PP_1923	0.40	+0.5
2,170,143	+		PP_1923	0.51	-0.2
2,170,144	-		PP_1923	0.51	+1.0
2,170,144	-		PP_1923	0.51	-2.1
2,170,286	+		PP_1923	0.69	+0.3
2,170,286	+		PP_1923	0.69	-2.5
2,170,286	+		PP_1923	0.69	-0.2
2,170,287	-		PP_1923	0.69	-1.0
2,170,387	+		PP_1923	0.82	+0.9
2,170,387	+		PP_1923	0.82	-0.5
2,170,387	+		PP_1923	0.82	+1.4
2,170,387	+		PP_1923	0.82	+0.6
2,170,387	+		PP_1923	0.82	-3.1
2,170,388	-		PP_1923	0.82	-0.7
2,170,388	-				-1.2
2,170,388	-		PP_1923	0.82	+0.9
2,170,391	+		PP_1923	0.83	-0.3
2,170,391	+		PP_1923	0.83	-1.4
2,170,391	+		PP_1923	0.83	-0.7
2,170,392	-		PP_1923	0.83	+0.5
2,170,412	-		PP_1923	0.85	+0.1
2,170,452	-				-0.1
2,170,468	+				-0.4
2,170,468	+				-3.1
2,170,468	+				-0.3
2,170,469	-				-0.2
2,170,549	+				-3.7
2,170,549	+				+0.2
2,170,550	-				-2.6
2,170,581	+				-0.4
2,170,581	+				-1.6
2,170,582	-				+0.3
2,170,607	+				-0.3
2,170,607	+				+0.1
2,170,608	-				-0.6
2,170,621	+				+1.2
2,170,621	+				-2.1
2,170,621	+				+0.3
2,170,621	+				-0.5
2,170,621	+				+0.3
2,170,622	-				-2.7
2,170,622	-				+0.4
2,170,622	-				-0.6
2,170,622	-				+0.4
2,170,653	+				-0.7
2,170,653	+				+0.6
2,170,654	-				-0.6
2,170,779	+		PP_5484	0.15	-0.1
2,170,780	-		PP_5484	0.15	+0.5
2,170,817	+		PP_5484	0.20	-0.1
2,170,817	+		PP_5484	0.20	-0.4
2,170,818	-		PP_5484	0.20	+1.2
2,170,818	-		PP_5484	0.20	+0.2
2,170,818	-		PP_5484	0.20	-0.5
2,170,818	-		PP_5484	0.20	-1.1
2,170,818	-		PP_5484	0.20	-0.6
2,170,826	+		PP_5484	0.21	-1.6
2,170,826	+		PP_5484	0.21	-0.1
2,170,827	-		PP_5484	0.21	-2.7
2,170,874	+		PP_5484	0.27	-1.8
2,170,874	+		PP_5484	0.27	-0.9
2,170,875	-		PP_5484	0.27	+0.1
2,170,878	-		PP_5484	0.27	+2.1
2,170,878	-		PP_5484	0.27	-0.3
2,170,885	+		PP_5484	0.28	-0.1
2,170,885	+		PP_5484	0.28	-0.7
2,170,886	-		PP_5484	0.28	-0.7
2,170,886	-		PP_5484	0.28	-1.5
2,170,886	-		PP_5484	0.28	+0.4
2,170,886	-		PP_5484	0.28	-4.0
2,171,035	+		PP_5484	0.47	-0.0
2,171,035	+		PP_5484	0.47	+0.9
2,171,035	+		PP_5484	0.47	-3.8
2,171,035	+		PP_5484	0.47	-1.1
2,171,035	+		PP_5484	0.47	+0.6
2,171,035	+		PP_5484	0.47	+1.2
2,171,035	+		PP_5484	0.47	+0.0
2,171,035	+		PP_5484	0.47	-0.6
2,171,036	-		PP_5484	0.47	+0.7
2,171,036	-		PP_5484	0.47	-1.1
2,171,036	-		PP_5484	0.47	-1.8
2,171,083	+		PP_5484	0.53	+0.3
2,171,083	+		PP_5484	0.53	+0.1
2,171,083	+		PP_5484	0.53	-4.2
2,171,084	-		PP_5484	0.53	-0.7
2,171,084	-		PP_5484	0.53	+0.1
2,171,103	+		PP_5484	0.55	-4.4
2,171,112	-		PP_5484	0.56	-1.5
2,171,112	-		PP_5484	0.56	+1.5
2,171,160	+		PP_5484	0.62	-0.3
2,171,176	+		PP_5484	0.64	-0.7
2,171,176	+		PP_5484	0.64	-0.1
2,171,176	+				+0.4
2,171,176	+		PP_5484	0.64	+0.8
2,171,176	+		PP_5484	0.64	-0.8
2,171,176	+		PP_5484	0.64	-0.7
2,171,176	+		PP_5484	0.64	-0.3
2,171,177	-		PP_5484	0.64	+0.9
2,171,216	+		PP_5484	0.69	-0.4
2,171,216	+		PP_5484	0.69	-0.2
2,171,217	-		PP_5484	0.69	-1.2
2,171,373	+		PP_5484	0.88	+0.5
2,171,374	-		PP_5484	0.89	-1.6
2,171,377	-		PP_5484	0.89	-0.5
2,171,515	-				+1.4
2,171,515	-				-0.3
2,171,552	+				-1.4
2,171,553	-				-1.4
2,171,563	+				-0.2
2,171,563	+				+0.3
2,171,563	+				+0.7
2,171,563	+				+0.4
2,171,563	+				+0.3
2,171,564	-				-3.9
2,171,564	-				+0.2
2,171,564	-				+0.0
2,171,564	-				+1.1
2,171,647	-				+0.9
2,171,647	-				+1.1
2,171,736	-				+0.2
2,171,826	+				-0.5
2,171,826	+				+0.1
2,171,826	+				+1.1
2,171,826	+				-0.6
2,171,826	+				-0.0
2,171,827	-				+0.9
2,171,827	-				-1.0
2,171,827	-				+0.3
2,171,869	+				-1.4
2,171,892	+				-0.4
2,171,901	+				-1.2
2,171,901	+				+0.2
2,171,901	+				+0.6
2,171,902	-				-0.4
2,171,902	-				+1.2
2,171,999	+		PP_1924	0.23	+0.5
2,172,119	-		PP_1924	0.45	+0.7
2,172,119	-		PP_1924	0.45	+0.2
2,172,119	-		PP_1924	0.45	-0.4
2,172,119	-		PP_1924	0.45	-0.8
2,172,163	+		PP_1924	0.53	+1.2
2,172,163	+		PP_1924	0.53	-0.1
2,172,163	+		PP_1924	0.53	-2.4
2,172,164	-		PP_1924	0.53	+2.8
2,172,164	-		PP_1924	0.53	-0.2
2,172,221	-		PP_1924	0.63	+1.2
2,172,227	-		PP_1924	0.64	-0.5
2,172,234	+		PP_1924	0.65	-0.3
2,172,234	+		PP_1924	0.65	+0.5
2,172,263	-		PP_1924	0.70	-3.5
2,172,338	+		PP_1924	0.84	-0.3
2,172,339	-		PP_1924	0.84	+0.5
2,172,339	-		PP_1924	0.84	-0.1
2,172,339	-		PP_1924	0.84	+0.1
2,172,364	+		PP_1924	0.88	-0.4
2,172,364	+		PP_1924	0.88	-2.3
2,172,411	-				-1.0
2,172,460	+				-1.0
2,172,460	+				+1.1