Experiment: 5-Aminovaleric 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0508 and PP_0509 are separated by 130 nucleotides PP_0509 and PP_0510 are separated by 151 nucleotides PP_0510 and PP_0511 are separated by 31 nucleotides PP_0511 and PP_0512 are separated by 0 nucleotides
PP_0508: PP_0508 - conserved exported protein of unknown function, at 596,864 to 597,445
_0508
PP_0509: PP_0509 - conserved protein of unknown function, at 597,576 to 597,920
_0509
PP_0510: PP_0510 - Thioredoxin, at 598,072 to 598,944
_0510
PP_0511: PP_0511 - putative methyltransferase, at 598,976 to 599,635
_0511
PP_0512: PP_0512 - hypothetical protein, at 599,636 to 600,043
_0512
Position (kb) 598
599 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 597.295 kb on + strand, within PP_0508 at 597.327 kb on - strand, within PP_0508 at 597.630 kb on - strand, within PP_0509 at 597.630 kb on - strand, within PP_0509 at 597.630 kb on - strand, within PP_0509 at 597.630 kb on - strand, within PP_0509 at 597.679 kb on + strand, within PP_0509 at 597.904 kb on - strand at 597.904 kb on - strand at 598.192 kb on - strand, within PP_0510 at 598.232 kb on + strand, within PP_0510 at 598.233 kb on - strand, within PP_0510 at 598.311 kb on + strand, within PP_0510 at 598.311 kb on + strand, within PP_0510 at 598.466 kb on + strand, within PP_0510 at 598.466 kb on + strand, within PP_0510 at 598.516 kb on + strand, within PP_0510 at 598.517 kb on - strand, within PP_0510 at 598.606 kb on + strand, within PP_0510 at 598.606 kb on + strand, within PP_0510 at 598.606 kb on + strand, within PP_0510 at 598.607 kb on - strand, within PP_0510 at 598.607 kb on - strand, within PP_0510 at 598.607 kb on - strand, within PP_0510 at 598.607 kb on - strand, within PP_0510 at 598.607 kb on - strand, within PP_0510 at 598.926 kb on - strand at 598.926 kb on - strand at 598.966 kb on + strand at 598.966 kb on + strand at 598.967 kb on - strand at 598.977 kb on + strand at 598.978 kb on - strand at 598.978 kb on - strand at 598.979 kb on + strand at 598.979 kb on + strand at 598.979 kb on + strand at 598.980 kb on - strand at 598.980 kb on - strand at 598.980 kb on - strand at 598.980 kb on - strand at 599.001 kb on + strand at 599.079 kb on + strand, within PP_0511 at 599.080 kb on - strand, within PP_0511 at 599.080 kb on - strand, within PP_0511 at 599.092 kb on + strand, within PP_0511 at 599.179 kb on - strand, within PP_0511 at 599.179 kb on - strand, within PP_0511 at 599.241 kb on + strand, within PP_0511 at 599.242 kb on - strand, within PP_0511 at 599.242 kb on - strand, within PP_0511 at 599.242 kb on - strand, within PP_0511 at 599.246 kb on + strand, within PP_0511 at 599.246 kb on + strand, within PP_0511 at 599.246 kb on + strand, within PP_0511 at 599.247 kb on - strand, within PP_0511 at 599.425 kb on - strand, within PP_0511 at 599.466 kb on + strand, within PP_0511 at 599.543 kb on + strand, within PP_0511 at 599.544 kb on - strand, within PP_0511 at 599.637 kb on + strand at 599.637 kb on + strand at 599.637 kb on + strand at 599.638 kb on - strand at 599.638 kb on - strand at 599.638 kb on - strand at 599.800 kb on - strand, within PP_0512 at 599.800 kb on - strand, within PP_0512 at 599.943 kb on + strand, within PP_0512
Per-strain Table
Position Strand Gene LocusTag Fraction 5-Aminovaleric 10 mM (C) remove 597,295 + PP_0508 0.74 +0.7 597,327 - PP_0508 0.80 -1.2 597,630 - PP_0509 0.16 +0.3 597,630 - PP_0509 0.16 +0.6 597,630 - PP_0509 0.16 -1.3 597,630 - PP_0509 0.16 -0.4 597,679 + PP_0509 0.30 -0.1 597,904 - -0.2 597,904 - +0.3 598,192 - PP_0510 0.14 -3.2 598,232 + PP_0510 0.18 -0.8 598,233 - PP_0510 0.18 -0.7 598,311 + PP_0510 0.27 +0.8 598,311 + PP_0510 0.27 -0.0 598,466 + PP_0510 0.45 -1.7 598,466 + PP_0510 0.45 -0.8 598,516 + PP_0510 0.51 -0.7 598,517 - PP_0510 0.51 +1.2 598,606 + PP_0510 0.61 -0.6 598,606 + PP_0510 0.61 -1.6 598,606 + PP_0510 0.61 +0.1 598,607 - PP_0510 0.61 -1.0 598,607 - PP_0510 0.61 +0.7 598,607 - PP_0510 0.61 -1.2 598,607 - PP_0510 0.61 -1.1 598,607 - PP_0510 0.61 -0.7 598,926 - +0.3 598,926 - -0.2 598,966 + +0.2 598,966 + -0.7 598,967 - -0.9 598,977 + -1.7 598,978 - -0.7 598,978 - -0.5 598,979 + -0.3 598,979 + +1.3 598,979 + -0.5 598,980 - -2.8 598,980 - +0.8 598,980 - +0.2 598,980 - -0.4 599,001 + -1.8 599,079 + PP_0511 0.16 +1.4 599,080 - PP_0511 0.16 +0.3 599,080 - PP_0511 0.16 +1.2 599,092 + PP_0511 0.18 +0.7 599,179 - PP_0511 0.31 -1.1 599,179 - PP_0511 0.31 -0.0 599,241 + PP_0511 0.40 -1.8 599,242 - PP_0511 0.40 +0.3 599,242 - PP_0511 0.40 +1.0 599,242 - PP_0511 0.40 +0.5 599,246 + PP_0511 0.41 +0.2 599,246 + PP_0511 0.41 -0.4 599,246 + PP_0511 0.41 +1.1 599,247 - PP_0511 0.41 -0.4 599,425 - PP_0511 0.68 +0.1 599,466 + PP_0511 0.74 -0.1 599,543 + PP_0511 0.86 -3.9 599,544 - PP_0511 0.86 -1.4 599,637 + +0.5 599,637 + +0.0 599,637 + +1.3 599,638 - +0.1 599,638 - +0.6 599,638 - +0.2 599,800 - PP_0512 0.40 -1.2 599,800 - PP_0512 0.40 -0.8 599,943 + PP_0512 0.75 -2.9
Or see this region's nucleotide sequence