Strain Fitness in Pseudomonas putida KT2440 around PP_0503

Experiment: 5-Aminovaleric 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0501 and PP_0502 are separated by 30 nucleotidesPP_0502 and PP_0503 are separated by 102 nucleotidesPP_0503 and PP_0504 overlap by 13 nucleotidesPP_0504 and PP_0505 are separated by 109 nucleotides PP_0501: PP_0501 - NAD-dependent epimerase/dehydratase family protein, at 590,754 to 591,686 _0501 PP_0502: PP_0502 - conserved protein of unknown function, at 591,717 to 592,160 _0502 PP_0503: PP_0503 - Major facilitator family transporter, at 592,263 to 593,468 _0503 PP_0504: PP_0504 - Outer membrane protein OprG, at 593,456 to 594,139 _0504 PP_0505: PP_0505 - conserved protein of unknown function, at 594,249 to 594,761 _0505 Position (kb) 592 593 594Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 591.759 kb on + strandat 591.759 kb on + strandat 591.759 kb on + strandat 591.759 kb on + strandat 591.759 kb on + strandat 591.760 kb on - strandat 591.760 kb on - strandat 591.760 kb on - strandat 591.760 kb on - strandat 591.793 kb on - strand, within PP_0502at 591.928 kb on + strand, within PP_0502at 591.929 kb on - strand, within PP_0502at 591.936 kb on - strand, within PP_0502at 591.937 kb on + strand, within PP_0502at 591.937 kb on + strand, within PP_0502at 591.938 kb on - strand, within PP_0502at 591.997 kb on - strand, within PP_0502at 592.111 kb on - strand, within PP_0502at 592.111 kb on - strand, within PP_0502at 592.211 kb on - strandat 592.214 kb on + strandat 592.215 kb on - strandat 592.289 kb on - strandat 592.335 kb on + strandat 592.335 kb on + strandat 592.336 kb on - strandat 592.336 kb on - strandat 592.429 kb on - strand, within PP_0503at 592.555 kb on + strand, within PP_0503at 592.555 kb on + strand, within PP_0503at 592.556 kb on - strand, within PP_0503at 592.556 kb on - strand, within PP_0503at 592.556 kb on - strand, within PP_0503at 592.752 kb on + strand, within PP_0503at 593.090 kb on + strand, within PP_0503at 593.091 kb on - strand, within PP_0503at 593.091 kb on - strand, within PP_0503at 593.277 kb on + strand, within PP_0503at 593.277 kb on + strand, within PP_0503at 593.278 kb on - strand, within PP_0503at 593.278 kb on - strand, within PP_0503at 593.278 kb on - strand, within PP_0503at 593.289 kb on + strand, within PP_0503at 593.289 kb on + strand, within PP_0503at 593.400 kb on + strandat 593.400 kb on + strandat 593.401 kb on - strandat 593.466 kb on + strandat 593.484 kb on + strandat 593.484 kb on + strandat 593.484 kb on + strandat 593.484 kb on + strandat 593.484 kb on + strandat 593.484 kb on + strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.485 kb on - strandat 593.486 kb on + strandat 593.486 kb on + strandat 593.526 kb on + strand, within PP_0504at 593.526 kb on + strand, within PP_0504at 593.527 kb on - strand, within PP_0504at 593.577 kb on + strand, within PP_0504at 593.578 kb on - strand, within PP_0504at 593.620 kb on - strand, within PP_0504at 593.620 kb on - strand, within PP_0504at 593.620 kb on - strand, within PP_0504at 593.644 kb on + strand, within PP_0504at 593.648 kb on + strand, within PP_0504at 593.649 kb on - strand, within PP_0504at 593.727 kb on + strand, within PP_0504at 593.728 kb on - strand, within PP_0504at 593.728 kb on - strand, within PP_0504at 593.781 kb on + strand, within PP_0504at 593.781 kb on + strand, within PP_0504at 593.884 kb on + strand, within PP_0504at 593.925 kb on + strand, within PP_0504at 593.926 kb on - strand, within PP_0504at 593.926 kb on - strand, within PP_0504at 593.926 kb on - strand, within PP_0504at 593.926 kb on - strandat 594.072 kb on + strandat 594.181 kb on + strandat 594.262 kb on + strandat 594.263 kb on - strandat 594.263 kb on - strandat 594.263 kb on - strandat 594.352 kb on + strand, within PP_0505at 594.361 kb on + strand, within PP_0505at 594.362 kb on - strand, within PP_0505at 594.448 kb on + strand, within PP_0505at 594.448 kb on + strand, within PP_0505at 594.449 kb on - strand, within PP_0505at 594.449 kb on - strand, within PP_0505at 594.449 kb on - strand, within PP_0505at 594.451 kb on + strand, within PP_0505at 594.452 kb on - strandat 594.452 kb on - strand, within PP_0505at 594.452 kb on - strand, within PP_0505

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Aminovaleric 10 mM (C)
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591,759 + +1.1
591,759 + -0.1
591,759 + -1.8
591,759 + +1.0
591,759 + -1.4
591,760 - +2.3
591,760 - -0.1
591,760 - -3.3
591,760 - -0.4
591,793 - PP_0502 0.17 -0.9
591,928 + PP_0502 0.48 +0.8
591,929 - PP_0502 0.48 +0.4
591,936 - PP_0502 0.49 +1.3
591,937 + PP_0502 0.50 +0.5
591,937 + PP_0502 0.50 +1.0
591,938 - PP_0502 0.50 -0.4
591,997 - PP_0502 0.63 -1.2
592,111 - PP_0502 0.89 -0.1
592,111 - PP_0502 0.89 -2.4
592,211 - +0.3
592,214 + -0.9
592,215 - +1.0
592,289 - +0.8
592,335 + -0.1
592,335 + -2.4
592,336 - -1.0
592,336 - -2.8
592,429 - PP_0503 0.14 -1.3
592,555 + PP_0503 0.24 +0.8
592,555 + PP_0503 0.24 -1.1
592,556 - PP_0503 0.24 -1.3
592,556 - PP_0503 0.24 -1.1
592,556 - PP_0503 0.24 -0.5
592,752 + PP_0503 0.41 -2.0
593,090 + PP_0503 0.69 -1.6
593,091 - PP_0503 0.69 +0.0
593,091 - PP_0503 0.69 +0.2
593,277 + PP_0503 0.84 -0.4
593,277 + PP_0503 0.84 -0.2
593,278 - PP_0503 0.84 +0.0
593,278 - PP_0503 0.84 -4.6
593,278 - PP_0503 0.84 -0.1
593,289 + PP_0503 0.85 -2.1
593,289 + PP_0503 0.85 +0.1
593,400 + +0.1
593,400 + -0.4
593,401 - -1.2
593,466 + +2.9
593,484 + -1.3
593,484 + -2.0
593,484 + +0.4
593,484 + +0.2
593,484 + -0.3
593,484 + -2.2
593,485 - -0.5
593,485 - +1.4
593,485 - -0.0
593,485 - +1.9
593,485 - -0.5
593,485 - -0.0
593,485 - +0.4
593,485 - +1.4
593,486 + +1.1
593,486 + -0.7
593,526 + PP_0504 0.10 -2.5
593,526 + PP_0504 0.10 +0.3
593,527 - PP_0504 0.10 -0.0
593,577 + PP_0504 0.18 -0.3
593,578 - PP_0504 0.18 +2.1
593,620 - PP_0504 0.24 +0.8
593,620 - PP_0504 0.24 +0.2
593,620 - PP_0504 0.24 +1.0
593,644 + PP_0504 0.27 +0.8
593,648 + PP_0504 0.28 +0.6
593,649 - PP_0504 0.28 -0.1
593,727 + PP_0504 0.40 -0.1
593,728 - PP_0504 0.40 +0.2
593,728 - PP_0504 0.40 -2.0
593,781 + PP_0504 0.48 +1.9
593,781 + PP_0504 0.48 -0.7
593,884 + PP_0504 0.63 -0.7
593,925 + PP_0504 0.69 +0.7
593,926 - PP_0504 0.69 +1.2
593,926 - PP_0504 0.69 +1.9
593,926 - PP_0504 0.69 +0.6
593,926 - -0.1
594,072 + +1.3
594,181 + -1.2
594,262 + +0.4
594,263 - +0.3
594,263 - -3.1
594,263 - -0.6
594,352 + PP_0505 0.20 -1.5
594,361 + PP_0505 0.22 +0.7
594,362 - PP_0505 0.22 -2.5
594,448 + PP_0505 0.39 -0.2
594,448 + PP_0505 0.39 -0.4
594,449 - PP_0505 0.39 -2.4
594,449 - PP_0505 0.39 +1.4
594,449 - PP_0505 0.39 -1.8
594,451 + PP_0505 0.39 +0.4
594,452 - +0.5
594,452 - PP_0505 0.40 -1.0
594,452 - PP_0505 0.40 +2.0

Or see this region's nucleotide sequence