Strain Fitness in Pseudomonas simiae WCS417 around PS417_20165

Experiment: RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x
4,376,280	+		PS417_20160	0.12	+0.0
4,376,406	-		PS417_20160	0.25	-1.9
4,376,420	+		PS417_20160	0.27	-4.9
4,376,420	+		PS417_20160	0.27	-3.3
4,376,421	-		PS417_20160	0.27	-3.9
4,376,615	+		PS417_20160	0.49	-4.3
4,376,616	-		PS417_20160	0.49	-3.6
4,376,814	-		PS417_20160	0.71	-3.6
4,377,060	+				-1.6
4,377,061	-				-4.5
4,377,084	-				-0.9
4,377,196	-				+0.3
4,377,262	-				+0.1
4,377,289	+				+0.0
4,377,303	+				+0.1
4,377,303	+				-1.8
4,377,413	-				+0.5
4,377,477	+				-0.5
4,377,478	-				+0.0
4,377,676	+				+0.7
4,377,676	+				-0.6
4,377,737	+				-0.5
4,377,738	-				+0.0
4,377,794	-		PS417_20165	0.10	+1.7
4,377,875	+		PS417_20165	0.12	-1.5
4,378,033	-		PS417_20165	0.14	+0.7
4,378,301	+		PS417_20165	0.19	+0.7
4,378,339	+		PS417_20165	0.20	-0.4
4,378,339	+				+1.7
4,378,339	+		PS417_20165	0.20	-1.0
4,378,340	-		PS417_20165	0.20	-0.2
4,378,340	-		PS417_20165	0.20	-0.4
4,378,340	-				-0.3
4,378,584	+		PS417_20165	0.24	+0.1
4,378,672	+		PS417_20165	0.25	+0.1
4,378,672	+		PS417_20165	0.25	+0.1
4,378,915	-		PS417_20165	0.29	+0.7
4,379,021	-		PS417_20165	0.31	-0.2
4,379,021	-		PS417_20165	0.31	+0.2
4,379,021	-		PS417_20165	0.31	-0.2
4,379,126	+		PS417_20165	0.33	-1.2
4,379,126	+		PS417_20165	0.33	-0.0
4,379,127	-		PS417_20165	0.33	-0.8
4,379,127	-		PS417_20165	0.33	+0.7
4,379,128	+		PS417_20165	0.33	-1.7
4,379,170	-		PS417_20165	0.34	-0.6
4,379,242	+		PS417_20165	0.35	-0.6
4,379,325	+		PS417_20165	0.36	+0.4
4,379,326	-		PS417_20165	0.36	-0.2
4,379,326	-		PS417_20165	0.36	-0.1
4,379,326	-		PS417_20165	0.36	-0.2
4,379,372	+		PS417_20165	0.37	+0.1
4,379,372	+				-1.1
4,379,372	+		PS417_20165	0.37	-0.7
4,379,373	-		PS417_20165	0.37	+0.2
4,379,373	-		PS417_20165	0.37	-0.5
4,379,373	-		PS417_20165	0.37	-0.0
4,379,452	+		PS417_20165	0.38	-0.1
4,379,453	-		PS417_20165	0.38	+0.7
4,379,627	+		PS417_20165	0.41	-0.4
4,379,660	+		PS417_20165	0.42	+3.2
4,379,761	-		PS417_20165	0.44	-0.1
4,379,773	-		PS417_20165	0.44	+0.7
4,380,067	+		PS417_20165	0.49	+0.7
4,380,067	+		PS417_20165	0.49	-1.1
4,380,067	+		PS417_20165	0.49	-0.4
4,380,151	+		PS417_20165	0.50	-1.9
4,380,151	+		PS417_20165	0.50	+0.2
4,380,151	+		PS417_20165	0.50	-0.7
4,380,152	-		PS417_20165	0.50	-1.0
4,380,152	-		PS417_20165	0.50	-0.1
4,380,152	-		PS417_20165	0.50	-0.6
4,380,152	-		PS417_20165	0.50	-0.5
4,380,256	+		PS417_20165	0.52	-0.3
4,380,275	+		PS417_20165	0.52	-1.2
4,380,276	-		PS417_20165	0.52	+2.3
4,380,391	+		PS417_20165	0.54	-1.5
4,380,512	+		PS417_20165	0.56	-0.4
4,380,512	+		PS417_20165	0.56	+0.6
4,380,512	+		PS417_20165	0.56	+0.4
4,380,512	+		PS417_20165	0.56	+0.1
4,380,513	-				+1.3
4,380,513	-		PS417_20165	0.56	-1.8
4,380,513	-		PS417_20165	0.56	+1.0
4,380,513	-		PS417_20165	0.56	-0.0
4,380,514	+				-2.1
4,380,514	+		PS417_20165	0.56	-0.2
4,380,514	+		PS417_20165	0.56	-0.4
4,380,514	+		PS417_20165	0.56	-0.4
4,380,514	+		PS417_20165	0.56	-1.5
4,380,514	+		PS417_20165	0.56	+0.6
4,380,514	+		PS417_20165	0.56	-0.5
4,380,514	+		PS417_20165	0.56	-1.0
4,380,514	+		PS417_20165	0.56	-0.2
4,380,515	-		PS417_20165	0.56	-0.5
4,380,515	-		PS417_20165	0.56	+0.0
4,380,515	-		PS417_20165	0.56	-0.1
4,380,515	-		PS417_20165	0.56	+0.2
4,380,515	-		PS417_20165	0.56	+0.0
4,380,515	-		PS417_20165	0.56	-0.6
4,380,515	-				-0.9
4,380,515	-		PS417_20165	0.56	-1.3
4,380,515	-		PS417_20165	0.56	+1.7
4,380,515	-		PS417_20165	0.56	-0.6
4,380,570	+		PS417_20165	0.57	-1.2
4,380,620	-				+2.3
4,380,695	-		PS417_20165	0.60	-0.9
4,380,930	-		PS417_20165	0.64	+0.1
4,380,930	-		PS417_20165	0.64	-0.3
4,380,930	-		PS417_20165	0.64	-0.4
4,381,194	-		PS417_20165	0.68	+0.5
4,381,313	+		PS417_20165	0.70	-0.4
4,381,313	+		PS417_20165	0.70	-0.4
4,381,391	+		PS417_20165	0.71	-0.2
4,381,559	+		PS417_20165	0.74	-0.2
4,381,951	+		PS417_20165	0.81	-1.2
4,381,952	-		PS417_20165	0.81	-0.5
4,382,005	-		PS417_20165	0.82	-0.3
4,382,074	+		PS417_20165	0.83	+2.0
4,382,095	+		PS417_20165	0.83	+0.7
4,382,095	+		PS417_20165	0.83	-0.4
4,382,095	+		PS417_20165	0.83	-1.4
4,382,095	+		PS417_20165	0.83	-0.6
4,382,096	-		PS417_20165	0.83	-0.9
4,382,129	-		PS417_20165	0.84	-0.2
4,382,164	+		PS417_20165	0.84	+0.1
4,382,164	+		PS417_20165	0.84	+1.4
4,382,165	-		PS417_20165	0.84	+1.6
4,382,181	-		PS417_20165	0.85	-0.0
4,382,241	+		PS417_20165	0.86	-1.5
4,382,242	-		PS417_20165	0.86	-0.8
4,382,242	-		PS417_20165	0.86	-2.6
4,382,245	+		PS417_20165	0.86	+0.4
4,382,245	+		PS417_20165	0.86	-0.1
4,382,245	+		PS417_20165	0.86	-0.5
4,382,374	+		PS417_20165	0.88	-0.0
4,382,374	+		PS417_20165	0.88	+0.0
4,382,588	+				+0.8
4,382,588	+				-0.0
4,382,589	-				+1.6
4,382,591	-				+0.5
4,382,647	+				+0.1
4,382,772	+				+1.0
4,382,773	-				+0.5
4,382,904	+				+0.2
4,382,904	+				-0.5
4,382,905	-				+1.1
4,382,905	-				-0.8
4,382,905	-				+2.3
4,382,908	+				-0.7
4,382,908	+				-0.2
4,382,908	+				-0.2
4,382,908	+				-0.9
4,382,909	-				+0.2
4,382,909	-				+0.8
4,383,059	+				-0.1
4,383,059	+				+2.0
4,383,059	+				-0.5
4,383,059	+				-0.1
4,383,060	-				+2.6
4,383,060	-				-0.7
4,383,060	-				+1.7
4,383,061	+				-0.1
4,383,061	+				-0.3
4,383,138	+				+0.7
4,383,138	+				-0.5
4,383,138	+				+0.1
4,383,138	+				-0.9
4,383,138	+				-0.1
4,383,138	+				-0.4
4,383,138	+				-0.2
4,383,138	+				-0.3
4,383,138	+				+0.0
4,383,138	+				+1.1
4,383,138	+				-0.6
4,383,138	+				-1.6
4,383,139	-				-0.3
4,383,139	-				+0.5
4,383,139	-				+0.2
4,383,139	-				+0.4
4,383,142	+				+0.0
4,383,142	+				+0.1
4,383,142	+				+0.1
4,383,143	-				+0.3
4,383,143	-				-0.2
4,383,143	-				-0.9
4,383,145	+				-1.1
4,383,145	+				+0.6
4,383,174	-				-0.4
4,383,174	-				-0.8
4,383,443	-		PS417_20170	0.49	-0.6
4,383,467	+		PS417_20170	0.53	-0.1
4,383,545	-		PS417_20170	0.66	-0.3
4,383,556	+		PS417_20170	0.68	+0.9
4,383,556	+		PS417_20170	0.68	-2.9
4,383,556	+		PS417_20170	0.68	+0.7
4,383,556	+		PS417_20170	0.68	-0.7
4,383,875	+		PS417_20175	0.14	+1.7
4,383,912	+		PS417_20175	0.18	+1.3
4,383,913	-		PS417_20175	0.18	-0.9
4,383,913	-		PS417_20175	0.18	+0.3
4,383,936	+		PS417_20175	0.21	-0.4
4,383,936	+		PS417_20175	0.21	-0.3
4,383,936	+		PS417_20175	0.21	+0.1
4,383,936	+		PS417_20175	0.21	-0.2
4,383,937	-		PS417_20175	0.21	+0.4
4,383,937	-		PS417_20175	0.21	-0.5
4,383,937	-		PS417_20175	0.21	-0.0
4,383,973	+		PS417_20175	0.25	+0.2
4,383,974	-		PS417_20175	0.25	+0.0
4,383,974	-		PS417_20175	0.25	-0.4