Experiment: KB with Physcion 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4782 and Psyr_4783 are separated by 15 nucleotides Psyr_4783 and Psyr_4784 are separated by 84 nucleotides Psyr_4784 and Psyr_4785 are separated by 228 nucleotides Psyr_4785 and Psyr_4786 are separated by 55 nucleotides
Psyr_4782: Psyr_4782 - NADH:flavin oxidoreductase/NADH oxidase, at 5,669,956 to 5,672,016
_4782
Psyr_4783: Psyr_4783 - conserved hypothetical protein, at 5,672,032 to 5,672,562
_4783
Psyr_4784: Psyr_4784 - Peptidase M19, renal dipeptidase, at 5,672,647 to 5,673,624
_4784
Psyr_4785: Psyr_4785 - Protein of unknown function DUF1311, at 5,673,853 to 5,674,263
_4785
Psyr_4786: Psyr_4786 - hypothetical protein, at 5,674,319 to 5,674,738
_4786
Position (kb) 5672
5673
5674 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5671.702 kb on - strand, within Psyr_4782 at 5671.883 kb on + strand at 5671.884 kb on - strand at 5671.884 kb on - strand at 5671.884 kb on - strand at 5671.886 kb on + strand at 5671.886 kb on + strand at 5671.886 kb on + strand at 5671.886 kb on + strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.887 kb on - strand at 5671.895 kb on + strand at 5671.895 kb on + strand at 5671.896 kb on - strand at 5671.929 kb on - strand at 5672.174 kb on + strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.174 kb on + strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.175 kb on - strand, within Psyr_4783 at 5672.207 kb on + strand, within Psyr_4783 at 5672.207 kb on + strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.208 kb on - strand, within Psyr_4783 at 5672.312 kb on + strand, within Psyr_4783 at 5672.312 kb on + strand, within Psyr_4783 at 5672.312 kb on + strand, within Psyr_4783 at 5672.312 kb on + strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.313 kb on - strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.399 kb on + strand, within Psyr_4783 at 5672.400 kb on - strand, within Psyr_4783 at 5672.400 kb on - strand, within Psyr_4783 at 5672.449 kb on - strand, within Psyr_4783 at 5672.449 kb on - strand, within Psyr_4783 at 5672.449 kb on - strand, within Psyr_4783 at 5672.480 kb on + strand, within Psyr_4783 at 5672.480 kb on + strand, within Psyr_4783 at 5672.480 kb on + strand, within Psyr_4783 at 5672.480 kb on + strand, within Psyr_4783 at 5672.480 kb on + strand, within Psyr_4783 at 5672.481 kb on - strand, within Psyr_4783 at 5672.556 kb on + strand at 5672.634 kb on + strand at 5672.634 kb on + strand at 5672.635 kb on - strand at 5672.635 kb on - strand at 5672.635 kb on - strand at 5672.843 kb on + strand, within Psyr_4784 at 5672.883 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5673.093 kb on - strand, within Psyr_4784 at 5673.093 kb on - strand, within Psyr_4784 at 5673.234 kb on - strand, within Psyr_4784 at 5673.266 kb on + strand, within Psyr_4784 at 5673.266 kb on + strand, within Psyr_4784 at 5673.266 kb on + strand, within Psyr_4784 at 5673.266 kb on + strand, within Psyr_4784 at 5673.266 kb on + strand, within Psyr_4784 at 5673.267 kb on - strand, within Psyr_4784 at 5673.267 kb on - strand, within Psyr_4784 at 5673.332 kb on + strand, within Psyr_4784 at 5673.332 kb on + strand, within Psyr_4784 at 5673.333 kb on - strand, within Psyr_4784 at 5673.333 kb on - strand, within Psyr_4784 at 5673.333 kb on - strand, within Psyr_4784 at 5673.333 kb on - strand, within Psyr_4784 at 5673.396 kb on + strand, within Psyr_4784 at 5673.607 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.790 kb on - strand at 5673.830 kb on + strand at 5673.831 kb on - strand at 5673.882 kb on + strand at 5673.883 kb on - strand at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.982 kb on + strand, within Psyr_4785 at 5673.982 kb on + strand, within Psyr_4785 at 5674.238 kb on - strand at 5674.269 kb on - strand at 5674.279 kb on - strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.292 kb on - strand at 5674.293 kb on + strand at 5674.293 kb on + strand at 5674.293 kb on + strand at 5674.293 kb on + strand at 5674.293 kb on + strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.324 kb on + strand at 5674.324 kb on + strand at 5674.324 kb on + strand at 5674.325 kb on - strand at 5674.325 kb on - strand at 5674.335 kb on + strand at 5674.335 kb on + strand at 5674.335 kb on + strand at 5674.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Physcion 10 mM remove 5,671,702 - Psyr_4782 0.85 -0.1 5,671,883 + -1.1 5,671,884 - +0.0 5,671,884 - -0.0 5,671,884 - -0.0 5,671,886 + -0.4 5,671,886 + -0.5 5,671,886 + -0.2 5,671,886 + +0.8 5,671,887 - +0.8 5,671,887 - -0.3 5,671,887 - +4.5 5,671,895 + -0.9 5,671,895 + -0.2 5,671,896 - -1.9 5,671,929 - -0.2 5,672,174 + Psyr_4783 0.27 +0.0 5,672,174 + Psyr_4783 0.27 +1.5 5,672,174 + Psyr_4783 0.27 +0.1 5,672,175 - Psyr_4783 0.27 +1.8 5,672,175 - Psyr_4783 0.27 +2.5 5,672,175 - Psyr_4783 0.27 +0.5 5,672,175 - Psyr_4783 0.27 +3.4 5,672,175 - Psyr_4783 0.27 -0.2 5,672,175 - Psyr_4783 0.27 -0.7 5,672,207 + Psyr_4783 0.33 -1.3 5,672,207 + Psyr_4783 0.33 -0.4 5,672,208 - Psyr_4783 0.33 -0.7 5,672,208 - Psyr_4783 0.33 +0.7 5,672,208 - Psyr_4783 0.33 +0.5 5,672,208 - Psyr_4783 0.33 -1.0 5,672,208 - Psyr_4783 0.33 +1.7 5,672,208 - Psyr_4783 0.33 -0.3 5,672,312 + Psyr_4783 0.53 +0.4 5,672,312 + Psyr_4783 0.53 +0.4 5,672,312 + Psyr_4783 0.53 +0.4 5,672,312 + Psyr_4783 0.53 -0.3 5,672,313 - Psyr_4783 0.53 -0.9 5,672,313 - Psyr_4783 0.53 +1.7 5,672,313 - Psyr_4783 0.53 +2.8 5,672,313 - Psyr_4783 0.53 -0.2 5,672,399 + Psyr_4783 0.69 +0.8 5,672,399 + Psyr_4783 0.69 +0.8 5,672,399 + Psyr_4783 0.69 +0.1 5,672,399 + Psyr_4783 0.69 +0.3 5,672,399 + Psyr_4783 0.69 +0.4 5,672,399 + Psyr_4783 0.69 +0.9 5,672,399 + Psyr_4783 0.69 -0.5 5,672,400 - Psyr_4783 0.69 -1.2 5,672,400 - Psyr_4783 0.69 +1.2 5,672,449 - Psyr_4783 0.79 -0.1 5,672,449 - Psyr_4783 0.79 +0.5 5,672,449 - Psyr_4783 0.79 +0.9 5,672,480 + Psyr_4783 0.84 +0.4 5,672,480 + Psyr_4783 0.84 -1.6 5,672,480 + Psyr_4783 0.84 -0.4 5,672,480 + Psyr_4783 0.84 -0.1 5,672,480 + Psyr_4783 0.84 +0.5 5,672,481 - Psyr_4783 0.85 -0.3 5,672,556 + +0.1 5,672,634 + -0.5 5,672,634 + +0.5 5,672,635 - +0.5 5,672,635 - +1.4 5,672,635 - +0.0 5,672,843 + Psyr_4784 0.20 -0.8 5,672,883 + Psyr_4784 0.24 +1.4 5,672,924 + Psyr_4784 0.28 -1.0 5,672,924 + Psyr_4784 0.28 -1.3 5,672,924 + Psyr_4784 0.28 -1.5 5,672,924 + Psyr_4784 0.28 +2.4 5,672,925 - Psyr_4784 0.28 -0.4 5,673,093 - Psyr_4784 0.46 -1.8 5,673,093 - Psyr_4784 0.46 +1.0 5,673,234 - Psyr_4784 0.60 -0.5 5,673,266 + Psyr_4784 0.63 +0.2 5,673,266 + Psyr_4784 0.63 +0.1 5,673,266 + Psyr_4784 0.63 +0.2 5,673,266 + Psyr_4784 0.63 +0.1 5,673,266 + Psyr_4784 0.63 -0.4 5,673,267 - Psyr_4784 0.63 -1.2 5,673,267 - Psyr_4784 0.63 -1.8 5,673,332 + Psyr_4784 0.70 +0.2 5,673,332 + Psyr_4784 0.70 -1.5 5,673,333 - Psyr_4784 0.70 -0.2 5,673,333 - Psyr_4784 0.70 +0.3 5,673,333 - Psyr_4784 0.70 -1.0 5,673,333 - Psyr_4784 0.70 -0.3 5,673,396 + Psyr_4784 0.77 +1.0 5,673,607 + +1.2 5,673,688 + +0.0 5,673,688 + +0.7 5,673,688 + -1.0 5,673,688 + -0.0 5,673,688 + +0.9 5,673,688 + -0.1 5,673,790 - -0.4 5,673,830 + +0.1 5,673,831 - -0.6 5,673,882 + +1.6 5,673,883 - -1.6 5,673,905 + Psyr_4785 0.13 +0.0 5,673,905 + Psyr_4785 0.13 -0.8 5,673,905 + Psyr_4785 0.13 +0.6 5,673,905 + Psyr_4785 0.13 +0.0 5,673,905 + Psyr_4785 0.13 -0.6 5,673,905 + Psyr_4785 0.13 -0.2 5,673,905 + Psyr_4785 0.13 -0.6 5,673,905 + Psyr_4785 0.13 -1.6 5,673,905 + Psyr_4785 0.13 +0.0 5,673,905 + Psyr_4785 0.13 -2.5 5,673,905 + Psyr_4785 0.13 +0.7 5,673,905 + Psyr_4785 0.13 -0.2 5,673,905 + Psyr_4785 0.13 +3.4 5,673,905 + Psyr_4785 0.13 -0.2 5,673,905 + Psyr_4785 0.13 -0.6 5,673,905 + Psyr_4785 0.13 +2.0 5,673,905 + Psyr_4785 0.13 +0.6 5,673,906 - Psyr_4785 0.13 -0.6 5,673,906 - Psyr_4785 0.13 +1.2 5,673,906 - Psyr_4785 0.13 +0.6 5,673,906 - Psyr_4785 0.13 +1.8 5,673,906 - Psyr_4785 0.13 +1.4 5,673,906 - Psyr_4785 0.13 -0.3 5,673,906 - Psyr_4785 0.13 +0.5 5,673,906 - Psyr_4785 0.13 -0.4 5,673,906 - Psyr_4785 0.13 +0.8 5,673,982 + Psyr_4785 0.31 +0.5 5,673,982 + Psyr_4785 0.31 -0.7 5,674,238 - +0.8 5,674,269 - +0.2 5,674,279 - -0.5 5,674,291 + +0.2 5,674,291 + +0.1 5,674,291 + -0.5 5,674,291 + +0.1 5,674,291 + +0.7 5,674,291 + +1.4 5,674,291 + -0.1 5,674,291 + -0.2 5,674,292 - +0.8 5,674,293 + -0.2 5,674,293 + +3.0 5,674,293 + -0.6 5,674,293 + +0.2 5,674,293 + -0.4 5,674,294 - -0.7 5,674,294 - +0.4 5,674,294 - -0.6 5,674,294 - -0.3 5,674,294 - -0.1 5,674,294 - +0.8 5,674,294 - -0.4 5,674,294 - +1.0 5,674,294 - +0.3 5,674,324 + +0.2 5,674,324 + +0.2 5,674,324 + +0.5 5,674,325 - +0.1 5,674,325 - +0.2 5,674,335 + +0.5 5,674,335 + +0.3 5,674,335 + +0.2 5,674,336 - +0.3
Or see this region's nucleotide sequence