Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4334

Experiment: KB with Physcion 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4332 and Psyr_4333 are separated by 25 nucleotidesPsyr_4333 and Psyr_4334 are separated by 6 nucleotidesPsyr_4334 and Psyr_4335 are separated by 381 nucleotidesPsyr_4335 and Psyr_4336 are separated by 13 nucleotides Psyr_4332: Psyr_4332 - conserved hypothetical protein, at 5,184,193 to 5,184,612 _4332 Psyr_4333: Psyr_4333 - Cation efflux protein, at 5,184,638 to 5,185,531 _4333 Psyr_4334: Psyr_4334 - conserved hypothetical protein, at 5,185,538 to 5,186,704 _4334 Psyr_4335: Psyr_4335 - transcriptional regulator, AsnC family, at 5,187,086 to 5,187,577 _4335 Psyr_4336: Psyr_4336 - ribosomal large subunit pseudouridine synthase E, at 5,187,591 to 5,188,223 _4336 Position (kb) 5185 5186 5187Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 5184.562 kb on - strand, within Psyr_4332at 5184.827 kb on + strand, within Psyr_4333at 5184.827 kb on + strand, within Psyr_4333at 5184.828 kb on - strand, within Psyr_4333at 5184.828 kb on - strand, within Psyr_4333at 5184.828 kb on - strand, within Psyr_4333at 5185.104 kb on - strand, within Psyr_4333at 5185.157 kb on + strand, within Psyr_4333at 5185.157 kb on + strand, within Psyr_4333at 5185.158 kb on - strand, within Psyr_4333at 5185.184 kb on + strand, within Psyr_4333at 5185.184 kb on + strand, within Psyr_4333at 5185.185 kb on - strand, within Psyr_4333at 5185.208 kb on + strand, within Psyr_4333at 5185.208 kb on + strand, within Psyr_4333at 5185.208 kb on + strand, within Psyr_4333at 5185.208 kb on + strand, within Psyr_4333at 5185.209 kb on - strand, within Psyr_4333at 5185.209 kb on - strand, within Psyr_4333at 5185.209 kb on - strand, within Psyr_4333at 5185.209 kb on - strand, within Psyr_4333at 5185.209 kb on - strand, within Psyr_4333at 5185.209 kb on - strand, within Psyr_4333at 5185.210 kb on + strand, within Psyr_4333at 5185.210 kb on + strand, within Psyr_4333at 5185.211 kb on - strand, within Psyr_4333at 5185.211 kb on - strand, within Psyr_4333at 5185.211 kb on - strand, within Psyr_4333at 5185.489 kb on - strandat 5185.489 kb on - strandat 5185.551 kb on + strandat 5185.552 kb on - strandat 5185.677 kb on + strand, within Psyr_4334at 5185.677 kb on + strand, within Psyr_4334at 5185.678 kb on - strand, within Psyr_4334at 5185.678 kb on - strand, within Psyr_4334at 5185.678 kb on - strand, within Psyr_4334at 5185.682 kb on - strand, within Psyr_4334at 5185.682 kb on - strand, within Psyr_4334at 5185.773 kb on + strand, within Psyr_4334at 5185.773 kb on + strand, within Psyr_4334at 5185.774 kb on - strand, within Psyr_4334at 5185.809 kb on + strand, within Psyr_4334at 5185.809 kb on + strand, within Psyr_4334at 5185.810 kb on - strand, within Psyr_4334at 5185.810 kb on - strand, within Psyr_4334at 5185.810 kb on - strand, within Psyr_4334at 5185.836 kb on + strand, within Psyr_4334at 5185.837 kb on - strand, within Psyr_4334at 5185.839 kb on + strand, within Psyr_4334at 5185.839 kb on + strand, within Psyr_4334at 5185.840 kb on - strand, within Psyr_4334at 5185.840 kb on - strand, within Psyr_4334at 5185.840 kb on - strand, within Psyr_4334at 5185.840 kb on - strand, within Psyr_4334at 5185.840 kb on - strand, within Psyr_4334at 5185.840 kb on - strand, within Psyr_4334at 5185.840 kb on - strand, within Psyr_4334at 5185.880 kb on + strand, within Psyr_4334at 5185.880 kb on + strand, within Psyr_4334at 5185.880 kb on + strand, within Psyr_4334at 5185.880 kb on + strand, within Psyr_4334at 5185.881 kb on - strand, within Psyr_4334at 5185.881 kb on - strand, within Psyr_4334at 5185.881 kb on - strand, within Psyr_4334at 5185.881 kb on - strand, within Psyr_4334at 5185.944 kb on + strand, within Psyr_4334at 5185.945 kb on - strand, within Psyr_4334at 5185.945 kb on - strand, within Psyr_4334at 5185.983 kb on + strand, within Psyr_4334at 5185.983 kb on + strand, within Psyr_4334at 5185.984 kb on - strand, within Psyr_4334at 5185.986 kb on + strand, within Psyr_4334at 5185.986 kb on + strand, within Psyr_4334at 5185.986 kb on + strand, within Psyr_4334at 5185.986 kb on + strand, within Psyr_4334at 5185.986 kb on + strand, within Psyr_4334at 5185.986 kb on + strand, within Psyr_4334at 5185.987 kb on - strand, within Psyr_4334at 5185.987 kb on - strand, within Psyr_4334at 5185.987 kb on - strand, within Psyr_4334at 5185.987 kb on - strand, within Psyr_4334at 5185.987 kb on - strand, within Psyr_4334at 5185.987 kb on - strand, within Psyr_4334at 5185.987 kb on - strand, within Psyr_4334at 5185.987 kb on - strand, within Psyr_4334at 5185.987 kb on - strand, within Psyr_4334at 5185.987 kb on - strand, within Psyr_4334at 5185.989 kb on + strand, within Psyr_4334at 5185.989 kb on + strand, within Psyr_4334at 5185.989 kb on + strand, within Psyr_4334at 5185.989 kb on + strand, within Psyr_4334at 5185.989 kb on + strand, within Psyr_4334at 5185.989 kb on + strand, within Psyr_4334at 5185.989 kb on + strand, within Psyr_4334at 5185.990 kb on - strand, within Psyr_4334at 5185.990 kb on - strand, within Psyr_4334at 5186.039 kb on + strand, within Psyr_4334at 5186.040 kb on - strand, within Psyr_4334at 5186.040 kb on - strand, within Psyr_4334at 5186.040 kb on - strand, within Psyr_4334at 5186.040 kb on - strand, within Psyr_4334at 5186.046 kb on + strand, within Psyr_4334at 5186.175 kb on + strand, within Psyr_4334at 5186.175 kb on + strand, within Psyr_4334at 5186.178 kb on + strand, within Psyr_4334at 5186.179 kb on - strand, within Psyr_4334at 5186.672 kb on + strandat 5186.672 kb on + strandat 5186.672 kb on + strandat 5186.672 kb on + strandat 5186.672 kb on + strandat 5186.672 kb on + strandat 5186.672 kb on + strandat 5186.672 kb on + strandat 5186.673 kb on - strandat 5186.673 kb on - strandat 5186.673 kb on - strandat 5186.673 kb on - strandat 5186.673 kb on - strandat 5186.673 kb on - strandat 5186.673 kb on - strandat 5186.717 kb on - strandat 5186.737 kb on + strandat 5186.737 kb on + strandat 5186.738 kb on - strandat 5186.738 kb on - strandat 5186.773 kb on + strandat 5186.816 kb on + strandat 5186.816 kb on + strandat 5186.816 kb on + strandat 5186.816 kb on + strandat 5186.816 kb on + strandat 5186.816 kb on + strandat 5186.817 kb on - strandat 5186.875 kb on + strandat 5186.875 kb on + strandat 5186.875 kb on + strandat 5186.875 kb on + strandat 5186.875 kb on + strandat 5186.875 kb on + strandat 5186.875 kb on + strandat 5186.875 kb on + strandat 5186.875 kb on + strandat 5186.875 kb on + strandat 5186.875 kb on + strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.876 kb on - strandat 5186.879 kb on + strandat 5186.879 kb on + strandat 5186.879 kb on + strandat 5186.880 kb on - strandat 5186.984 kb on + strandat 5187.026 kb on - strandat 5187.117 kb on - strandat 5187.117 kb on - strandat 5187.117 kb on - strandat 5187.242 kb on + strand, within Psyr_4335at 5187.242 kb on + strand, within Psyr_4335at 5187.243 kb on - strand, within Psyr_4335at 5187.419 kb on + strand, within Psyr_4335at 5187.420 kb on - strand, within Psyr_4335at 5187.616 kb on + strandat 5187.617 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Physcion 10 mM
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5,184,562 - Psyr_4332 0.88 -2.2
5,184,827 + Psyr_4333 0.21 -0.2
5,184,827 + Psyr_4333 0.21 +1.2
5,184,828 - Psyr_4333 0.21 -0.9
5,184,828 - Psyr_4333 0.21 -0.1
5,184,828 - Psyr_4333 0.21 -0.6
5,185,104 - Psyr_4333 0.52 +0.7
5,185,157 + Psyr_4333 0.58 +2.1
5,185,157 + Psyr_4333 0.58 +1.0
5,185,158 - Psyr_4333 0.58 -0.2
5,185,184 + Psyr_4333 0.61 +2.3
5,185,184 + Psyr_4333 0.61 +0.8
5,185,185 - Psyr_4333 0.61 -0.4
5,185,208 + Psyr_4333 0.64 +0.7
5,185,208 + Psyr_4333 0.64 +0.1
5,185,208 + Psyr_4333 0.64 -0.2
5,185,208 + Psyr_4333 0.64 -0.1
5,185,209 - Psyr_4333 0.64 -0.1
5,185,209 - Psyr_4333 0.64 -1.3
5,185,209 - Psyr_4333 0.64 +2.3
5,185,209 - Psyr_4333 0.64 +0.0
5,185,209 - Psyr_4333 0.64 -0.2
5,185,209 - Psyr_4333 0.64 +0.6
5,185,210 + Psyr_4333 0.64 +0.7
5,185,210 + Psyr_4333 0.64 +1.9
5,185,211 - Psyr_4333 0.64 +0.0
5,185,211 - Psyr_4333 0.64 -1.3
5,185,211 - Psyr_4333 0.64 -2.5
5,185,489 - +0.7
5,185,489 - -0.7
5,185,551 + +2.3
5,185,552 - +2.3
5,185,677 + Psyr_4334 0.12 +3.9
5,185,677 + Psyr_4334 0.12 -0.7
5,185,678 - Psyr_4334 0.12 +2.0
5,185,678 - Psyr_4334 0.12 +1.0
5,185,678 - Psyr_4334 0.12 +0.4
5,185,682 - Psyr_4334 0.12 -0.7
5,185,682 - Psyr_4334 0.12 -1.9
5,185,773 + Psyr_4334 0.20 -0.7
5,185,773 + Psyr_4334 0.20 -0.3
5,185,774 - Psyr_4334 0.20 +0.1
5,185,809 + Psyr_4334 0.23 +2.9
5,185,809 + Psyr_4334 0.23 -0.8
5,185,810 - Psyr_4334 0.23 +0.0
5,185,810 - Psyr_4334 0.23 -0.3
5,185,810 - Psyr_4334 0.23 -0.4
5,185,836 + Psyr_4334 0.26 -0.1
5,185,837 - Psyr_4334 0.26 -0.6
5,185,839 + Psyr_4334 0.26 +0.2
5,185,839 + Psyr_4334 0.26 +0.0
5,185,840 - Psyr_4334 0.26 -2.0
5,185,840 - Psyr_4334 0.26 +0.4
5,185,840 - Psyr_4334 0.26 +2.3
5,185,840 - Psyr_4334 0.26 -0.8
5,185,840 - Psyr_4334 0.26 +1.5
5,185,840 - Psyr_4334 0.26 -0.4
5,185,840 - Psyr_4334 0.26 -0.4
5,185,880 + Psyr_4334 0.29 +2.3
5,185,880 + Psyr_4334 0.29 -1.0
5,185,880 + Psyr_4334 0.29 -0.8
5,185,880 + Psyr_4334 0.29 -0.1
5,185,881 - Psyr_4334 0.29 +1.7
5,185,881 - Psyr_4334 0.29 +0.8
5,185,881 - Psyr_4334 0.29 +0.5
5,185,881 - Psyr_4334 0.29 +0.4
5,185,944 + Psyr_4334 0.35 +0.4
5,185,945 - Psyr_4334 0.35 -0.5
5,185,945 - Psyr_4334 0.35 -0.3
5,185,983 + Psyr_4334 0.38 +0.3
5,185,983 + Psyr_4334 0.38 -1.8
5,185,984 - Psyr_4334 0.38 -0.0
5,185,986 + Psyr_4334 0.38 -1.0
5,185,986 + Psyr_4334 0.38 -0.5
5,185,986 + Psyr_4334 0.38 +0.3
5,185,986 + Psyr_4334 0.38 +3.9
5,185,986 + Psyr_4334 0.38 +2.4
5,185,986 + Psyr_4334 0.38 +0.5
5,185,987 - Psyr_4334 0.38 +2.3
5,185,987 - Psyr_4334 0.38 +1.5
5,185,987 - Psyr_4334 0.38 +0.1
5,185,987 - Psyr_4334 0.38 -0.8
5,185,987 - Psyr_4334 0.38 -0.6
5,185,987 - Psyr_4334 0.38 +0.9
5,185,987 - Psyr_4334 0.38 -1.4
5,185,987 - Psyr_4334 0.38 -0.5
5,185,987 - Psyr_4334 0.38 +0.4
5,185,987 - Psyr_4334 0.38 +0.8
5,185,989 + Psyr_4334 0.39 -1.2
5,185,989 + Psyr_4334 0.39 -0.0
5,185,989 + Psyr_4334 0.39 -1.0
5,185,989 + Psyr_4334 0.39 +1.0
5,185,989 + Psyr_4334 0.39 +0.5
5,185,989 + Psyr_4334 0.39 +2.3
5,185,989 + Psyr_4334 0.39 -0.4
5,185,990 - Psyr_4334 0.39 +1.4
5,185,990 - Psyr_4334 0.39 +0.1
5,186,039 + Psyr_4334 0.43 -1.5
5,186,040 - Psyr_4334 0.43 +0.5
5,186,040 - Psyr_4334 0.43 +1.8
5,186,040 - Psyr_4334 0.43 +1.6
5,186,040 - Psyr_4334 0.43 +1.3
5,186,046 + Psyr_4334 0.44 -0.9
5,186,175 + Psyr_4334 0.55 -0.4
5,186,175 + Psyr_4334 0.55 -0.9
5,186,178 + Psyr_4334 0.55 +0.1
5,186,179 - Psyr_4334 0.55 -1.0
5,186,672 + -0.0
5,186,672 + -0.3
5,186,672 + -0.8
5,186,672 + -1.6
5,186,672 + +0.6
5,186,672 + -0.3
5,186,672 + -0.3
5,186,672 + -0.9
5,186,673 - -0.1
5,186,673 - -0.5
5,186,673 - -0.7
5,186,673 - -0.7
5,186,673 - -2.0
5,186,673 - +0.5
5,186,673 - -0.2
5,186,717 - +0.2
5,186,737 + +0.1
5,186,737 + +1.3
5,186,738 - -2.1
5,186,738 - -0.2
5,186,773 + -0.7
5,186,816 + -0.2
5,186,816 + -0.7
5,186,816 + -0.1
5,186,816 + +1.3
5,186,816 + -0.1
5,186,816 + -1.7
5,186,817 - +1.1
5,186,875 + -1.6
5,186,875 + -0.8
5,186,875 + -0.7
5,186,875 + +1.2
5,186,875 + -1.1
5,186,875 + +2.9
5,186,875 + +0.0
5,186,875 + +0.6
5,186,875 + +0.9
5,186,875 + -1.9
5,186,875 + +0.1
5,186,876 - +0.3
5,186,876 - +0.1
5,186,876 - -0.5
5,186,876 - -0.6
5,186,876 - -0.7
5,186,876 - +0.4
5,186,876 - +0.8
5,186,876 - -0.5
5,186,876 - +0.5
5,186,876 - +0.2
5,186,876 - -0.2
5,186,876 - -0.3
5,186,876 - +0.6
5,186,876 - -1.7
5,186,876 - -0.8
5,186,876 - +0.0
5,186,876 - +0.3
5,186,876 - +0.2
5,186,876 - -2.2
5,186,879 + +0.0
5,186,879 + +1.9
5,186,879 + -0.1
5,186,880 - -0.4
5,186,984 + -0.7
5,187,026 - +0.9
5,187,117 - -1.4
5,187,117 - -0.2
5,187,117 - +0.4
5,187,242 + Psyr_4335 0.32 -0.9
5,187,242 + Psyr_4335 0.32 +4.4
5,187,243 - Psyr_4335 0.32 -0.2
5,187,419 + Psyr_4335 0.68 -1.0
5,187,420 - Psyr_4335 0.68 -1.1
5,187,616 + -0.3
5,187,617 - +0.2

Or see this region's nucleotide sequence