Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1328

Experiment: KB with Physcion 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1326 and Psyr_1327 are separated by 204 nucleotidesPsyr_1327 and Psyr_1328 are separated by 113 nucleotidesPsyr_1328 and Psyr_1329 are separated by 178 nucleotidesPsyr_1329 and Psyr_1330 are separated by 19 nucleotides Psyr_1326: Psyr_1326 - conserved hypothetical protein, at 1,503,367 to 1,504,056 _1326 Psyr_1327: Psyr_1327 - conserved hypothetical protein, at 1,504,261 to 1,504,611 _1327 Psyr_1328: Psyr_1328 - glycerol-3-phosphate acyltransferase, at 1,504,725 to 1,507,226 _1328 Psyr_1329: Psyr_1329 - conserved hypothetical protein, at 1,507,405 to 1,507,782 _1329 Psyr_1330: Psyr_1330 - 23S rRNA m(1)G-745 methyltransferase, at 1,507,802 to 1,508,611 _1330 Position (kb) 1504 1505 1506 1507 1508Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1503.862 kb on + strand, within Psyr_1326at 1503.862 kb on + strand, within Psyr_1326at 1503.862 kb on + strand, within Psyr_1326at 1503.862 kb on + strand, within Psyr_1326at 1503.862 kb on + strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1503.863 kb on - strand, within Psyr_1326at 1504.108 kb on + strandat 1504.108 kb on + strandat 1504.109 kb on - strandat 1504.351 kb on - strand, within Psyr_1327at 1504.388 kb on + strand, within Psyr_1327at 1504.388 kb on + strand, within Psyr_1327at 1504.388 kb on + strand, within Psyr_1327at 1504.388 kb on + strand, within Psyr_1327at 1504.388 kb on + strand, within Psyr_1327at 1504.388 kb on + strand, within Psyr_1327at 1504.389 kb on - strand, within Psyr_1327at 1504.389 kb on - strand, within Psyr_1327at 1504.424 kb on + strand, within Psyr_1327at 1504.458 kb on + strand, within Psyr_1327at 1504.568 kb on + strand, within Psyr_1327at 1504.569 kb on - strand, within Psyr_1327at 1504.569 kb on - strand, within Psyr_1327at 1504.571 kb on + strand, within Psyr_1327at 1504.591 kb on + strandat 1504.591 kb on + strandat 1504.591 kb on + strandat 1504.592 kb on - strandat 1504.595 kb on - strandat 1504.663 kb on + strandat 1504.664 kb on - strandat 1504.664 kb on - strandat 1504.664 kb on - strandat 1504.683 kb on - strandat 1504.695 kb on + strandat 1504.709 kb on + strandat 1504.864 kb on + strandat 1504.864 kb on + strandat 1504.865 kb on - strandat 1504.897 kb on - strandat 1505.074 kb on + strand, within Psyr_1328at 1505.074 kb on + strand, within Psyr_1328at 1505.074 kb on + strand, within Psyr_1328at 1505.075 kb on - strand, within Psyr_1328at 1505.124 kb on + strand, within Psyr_1328at 1505.158 kb on + strand, within Psyr_1328at 1505.159 kb on - strand, within Psyr_1328at 1505.159 kb on - strand, within Psyr_1328at 1505.293 kb on + strand, within Psyr_1328at 1505.293 kb on + strand, within Psyr_1328at 1505.294 kb on - strand, within Psyr_1328at 1505.389 kb on + strand, within Psyr_1328at 1505.392 kb on + strand, within Psyr_1328at 1505.392 kb on + strand, within Psyr_1328at 1505.392 kb on + strand, within Psyr_1328at 1505.392 kb on + strand, within Psyr_1328at 1505.392 kb on + strand, within Psyr_1328at 1505.392 kb on + strand, within Psyr_1328at 1505.393 kb on - strand, within Psyr_1328at 1505.393 kb on - strand, within Psyr_1328at 1505.393 kb on - strand, within Psyr_1328at 1505.393 kb on - strand, within Psyr_1328at 1505.393 kb on - strand, within Psyr_1328at 1505.393 kb on - strand, within Psyr_1328at 1505.393 kb on - strand, within Psyr_1328at 1505.861 kb on + strand, within Psyr_1328at 1505.911 kb on + strand, within Psyr_1328at 1505.911 kb on + strand, within Psyr_1328at 1505.911 kb on + strand, within Psyr_1328at 1505.911 kb on + strand, within Psyr_1328at 1505.911 kb on + strand, within Psyr_1328at 1505.911 kb on + strand, within Psyr_1328at 1505.912 kb on - strand, within Psyr_1328at 1505.912 kb on - strand, within Psyr_1328at 1505.915 kb on + strand, within Psyr_1328at 1505.915 kb on + strand, within Psyr_1328at 1505.915 kb on + strand, within Psyr_1328at 1505.916 kb on - strand, within Psyr_1328at 1505.916 kb on - strand, within Psyr_1328at 1505.947 kb on + strand, within Psyr_1328at 1505.947 kb on + strand, within Psyr_1328at 1505.948 kb on - strand, within Psyr_1328at 1505.948 kb on - strand, within Psyr_1328at 1505.948 kb on - strand, within Psyr_1328at 1505.948 kb on - strand, within Psyr_1328at 1505.948 kb on - strand, within Psyr_1328at 1505.967 kb on - strand, within Psyr_1328at 1506.070 kb on + strand, within Psyr_1328at 1506.070 kb on + strand, within Psyr_1328at 1506.128 kb on + strand, within Psyr_1328at 1506.128 kb on + strand, within Psyr_1328at 1506.129 kb on - strand, within Psyr_1328at 1506.130 kb on + strand, within Psyr_1328at 1506.130 kb on + strand, within Psyr_1328at 1506.206 kb on + strand, within Psyr_1328at 1506.206 kb on + strand, within Psyr_1328at 1506.207 kb on - strand, within Psyr_1328at 1506.207 kb on - strand, within Psyr_1328at 1506.207 kb on - strand, within Psyr_1328at 1506.265 kb on + strand, within Psyr_1328at 1506.265 kb on + strand, within Psyr_1328at 1506.265 kb on + strand, within Psyr_1328at 1506.266 kb on - strand, within Psyr_1328at 1506.266 kb on - strand, within Psyr_1328at 1506.310 kb on + strand, within Psyr_1328at 1506.310 kb on + strand, within Psyr_1328at 1506.310 kb on + strand, within Psyr_1328at 1506.310 kb on + strand, within Psyr_1328at 1506.310 kb on + strand, within Psyr_1328at 1506.310 kb on + strand, within Psyr_1328at 1506.310 kb on + strand, within Psyr_1328at 1506.310 kb on + strand, within Psyr_1328at 1506.310 kb on + strand, within Psyr_1328at 1506.310 kb on + strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.311 kb on - strand, within Psyr_1328at 1506.376 kb on + strand, within Psyr_1328at 1506.376 kb on + strand, within Psyr_1328at 1506.376 kb on + strand, within Psyr_1328at 1506.376 kb on + strand, within Psyr_1328at 1506.377 kb on - strand, within Psyr_1328at 1506.430 kb on + strand, within Psyr_1328at 1506.430 kb on + strand, within Psyr_1328at 1506.437 kb on - strand, within Psyr_1328at 1506.437 kb on - strand, within Psyr_1328at 1506.437 kb on - strand, within Psyr_1328at 1506.437 kb on - strand, within Psyr_1328at 1506.664 kb on + strand, within Psyr_1328at 1506.763 kb on - strand, within Psyr_1328at 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.096 kb on + strandat 1507.097 kb on - strandat 1507.097 kb on - strandat 1507.097 kb on - strandat 1507.097 kb on - strandat 1507.097 kb on - strandat 1507.130 kb on + strandat 1507.131 kb on - strandat 1507.131 kb on - strandat 1507.171 kb on + strandat 1507.171 kb on + strandat 1507.171 kb on + strandat 1507.171 kb on + strandat 1507.171 kb on + strandat 1507.171 kb on + strandat 1507.171 kb on + strandat 1507.171 kb on + strandat 1507.172 kb on - strandat 1507.227 kb on - strandat 1507.283 kb on + strandat 1507.379 kb on + strandat 1507.379 kb on + strandat 1507.379 kb on + strandat 1507.380 kb on - strandat 1507.380 kb on - strandat 1507.380 kb on - strandat 1507.406 kb on + strandat 1507.423 kb on - strandat 1507.453 kb on + strand, within Psyr_1329at 1507.513 kb on + strand, within Psyr_1329at 1507.513 kb on + strand, within Psyr_1329at 1507.514 kb on - strand, within Psyr_1329at 1507.514 kb on - strand, within Psyr_1329at 1507.514 kb on - strand, within Psyr_1329at 1507.514 kb on - strand, within Psyr_1329at 1507.757 kb on + strandat 1507.757 kb on + strandat 1507.758 kb on - strandat 1507.804 kb on - strandat 1507.804 kb on - strandat 1507.962 kb on + strand, within Psyr_1330at 1507.963 kb on - strand, within Psyr_1330at 1508.031 kb on + strand, within Psyr_1330at 1508.049 kb on + strand, within Psyr_1330at 1508.049 kb on + strand, within Psyr_1330at 1508.050 kb on - strand, within Psyr_1330at 1508.050 kb on - strand, within Psyr_1330

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Physcion 10 mM
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1,503,862 + Psyr_1326 0.72 +0.6
1,503,862 + Psyr_1326 0.72 +0.4
1,503,862 + Psyr_1326 0.72 +0.7
1,503,862 + Psyr_1326 0.72 -1.2
1,503,862 + Psyr_1326 0.72 +0.7
1,503,863 - Psyr_1326 0.72 +0.8
1,503,863 - Psyr_1326 0.72 -0.2
1,503,863 - Psyr_1326 0.72 -1.2
1,503,863 - Psyr_1326 0.72 -0.4
1,503,863 - Psyr_1326 0.72 +1.1
1,504,108 + +1.1
1,504,108 + -0.2
1,504,109 - -0.8
1,504,351 - Psyr_1327 0.26 +0.7
1,504,388 + Psyr_1327 0.36 +0.1
1,504,388 + Psyr_1327 0.36 -0.3
1,504,388 + Psyr_1327 0.36 -1.8
1,504,388 + Psyr_1327 0.36 +0.0
1,504,388 + Psyr_1327 0.36 +3.6
1,504,388 + Psyr_1327 0.36 -1.0
1,504,389 - Psyr_1327 0.36 +0.5
1,504,389 - Psyr_1327 0.36 +1.6
1,504,424 + Psyr_1327 0.46 +2.2
1,504,458 + Psyr_1327 0.56 +1.0
1,504,568 + Psyr_1327 0.87 -1.0
1,504,569 - Psyr_1327 0.88 -0.7
1,504,569 - Psyr_1327 0.88 +0.5
1,504,571 + Psyr_1327 0.88 -1.0
1,504,591 + -0.7
1,504,591 + +1.7
1,504,591 + -1.2
1,504,592 - +0.9
1,504,595 - -0.5
1,504,663 + -1.2
1,504,664 - -0.2
1,504,664 - +0.4
1,504,664 - +0.2
1,504,683 - +0.1
1,504,695 + -2.9
1,504,709 + +1.5
1,504,864 + +1.0
1,504,864 + -0.1
1,504,865 - +0.3
1,504,897 - -0.1
1,505,074 + Psyr_1328 0.14 -0.7
1,505,074 + Psyr_1328 0.14 -1.3
1,505,074 + Psyr_1328 0.14 -2.1
1,505,075 - Psyr_1328 0.14 +0.4
1,505,124 + Psyr_1328 0.16 +0.5
1,505,158 + Psyr_1328 0.17 +0.8
1,505,159 - Psyr_1328 0.17 -2.2
1,505,159 - Psyr_1328 0.17 +2.8
1,505,293 + Psyr_1328 0.23 +0.5
1,505,293 + Psyr_1328 0.23 +1.8
1,505,294 - Psyr_1328 0.23 +2.1
1,505,389 + Psyr_1328 0.27 +1.5
1,505,392 + Psyr_1328 0.27 +0.9
1,505,392 + Psyr_1328 0.27 +0.2
1,505,392 + Psyr_1328 0.27 +0.1
1,505,392 + Psyr_1328 0.27 -1.0
1,505,392 + Psyr_1328 0.27 +0.9
1,505,392 + Psyr_1328 0.27 -0.3
1,505,393 - Psyr_1328 0.27 +1.5
1,505,393 - Psyr_1328 0.27 -1.6
1,505,393 - Psyr_1328 0.27 -1.1
1,505,393 - Psyr_1328 0.27 +2.8
1,505,393 - Psyr_1328 0.27 -0.5
1,505,393 - Psyr_1328 0.27 -0.4
1,505,393 - Psyr_1328 0.27 -0.6
1,505,861 + Psyr_1328 0.45 +4.4
1,505,911 + Psyr_1328 0.47 -1.4
1,505,911 + Psyr_1328 0.47 +0.7
1,505,911 + Psyr_1328 0.47 -3.5
1,505,911 + Psyr_1328 0.47 -0.8
1,505,911 + Psyr_1328 0.47 -1.0
1,505,911 + Psyr_1328 0.47 +0.4
1,505,912 - Psyr_1328 0.47 +1.0
1,505,912 - Psyr_1328 0.47 +4.0
1,505,915 + Psyr_1328 0.48 -1.7
1,505,915 + Psyr_1328 0.48 +1.6
1,505,915 + Psyr_1328 0.48 -0.2
1,505,916 - Psyr_1328 0.48 +1.0
1,505,916 - Psyr_1328 0.48 +0.2
1,505,947 + Psyr_1328 0.49 -0.4
1,505,947 + Psyr_1328 0.49 +2.8
1,505,948 - Psyr_1328 0.49 +2.2
1,505,948 - Psyr_1328 0.49 +2.0
1,505,948 - Psyr_1328 0.49 +2.1
1,505,948 - Psyr_1328 0.49 +0.7
1,505,948 - Psyr_1328 0.49 +0.3
1,505,967 - Psyr_1328 0.50 -0.3
1,506,070 + Psyr_1328 0.54 -0.7
1,506,070 + Psyr_1328 0.54 -0.3
1,506,128 + Psyr_1328 0.56 +2.2
1,506,128 + Psyr_1328 0.56 -1.0
1,506,129 - Psyr_1328 0.56 +1.1
1,506,130 + Psyr_1328 0.56 -0.0
1,506,130 + Psyr_1328 0.56 +0.7
1,506,206 + Psyr_1328 0.59 +0.1
1,506,206 + Psyr_1328 0.59 +0.6
1,506,207 - Psyr_1328 0.59 -0.9
1,506,207 - Psyr_1328 0.59 -1.8
1,506,207 - Psyr_1328 0.59 +0.5
1,506,265 + Psyr_1328 0.62 +0.4
1,506,265 + Psyr_1328 0.62 +0.9
1,506,265 + Psyr_1328 0.62 -0.6
1,506,266 - Psyr_1328 0.62 -1.8
1,506,266 - Psyr_1328 0.62 -0.4
1,506,310 + Psyr_1328 0.63 +0.0
1,506,310 + Psyr_1328 0.63 -0.5
1,506,310 + Psyr_1328 0.63 +1.2
1,506,310 + Psyr_1328 0.63 -0.5
1,506,310 + Psyr_1328 0.63 -0.5
1,506,310 + Psyr_1328 0.63 -0.7
1,506,310 + Psyr_1328 0.63 -0.6
1,506,310 + Psyr_1328 0.63 -0.5
1,506,310 + Psyr_1328 0.63 +0.5
1,506,310 + Psyr_1328 0.63 +0.2
1,506,311 - Psyr_1328 0.63 -0.2
1,506,311 - Psyr_1328 0.63 +0.9
1,506,311 - Psyr_1328 0.63 +0.4
1,506,311 - Psyr_1328 0.63 -0.3
1,506,311 - Psyr_1328 0.63 +3.6
1,506,311 - Psyr_1328 0.63 -0.4
1,506,311 - Psyr_1328 0.63 +1.7
1,506,311 - Psyr_1328 0.63 -0.9
1,506,311 - Psyr_1328 0.63 -1.3
1,506,311 - Psyr_1328 0.63 -0.8
1,506,311 - Psyr_1328 0.63 +0.0
1,506,311 - Psyr_1328 0.63 -1.8
1,506,311 - Psyr_1328 0.63 +0.3
1,506,376 + Psyr_1328 0.66 -2.3
1,506,376 + Psyr_1328 0.66 +1.9
1,506,376 + Psyr_1328 0.66 +1.7
1,506,376 + Psyr_1328 0.66 -0.3
1,506,377 - Psyr_1328 0.66 +0.3
1,506,430 + Psyr_1328 0.68 -0.1
1,506,430 + Psyr_1328 0.68 +1.7
1,506,437 - Psyr_1328 0.68 -0.3
1,506,437 - Psyr_1328 0.68 -0.2
1,506,437 - Psyr_1328 0.68 -0.0
1,506,437 - Psyr_1328 0.68 +0.3
1,506,664 + Psyr_1328 0.77 +1.7
1,506,763 - Psyr_1328 0.81 +3.6
1,507,096 + +1.8
1,507,096 + -0.3
1,507,096 + +2.8
1,507,096 + +1.0
1,507,096 + +1.2
1,507,096 + +3.6
1,507,097 - +0.4
1,507,097 - +1.6
1,507,097 - -0.0
1,507,097 - -0.4
1,507,097 - +0.5
1,507,130 + +3.2
1,507,131 - +1.2
1,507,131 - -0.5
1,507,171 + +0.2
1,507,171 + -0.2
1,507,171 + -1.2
1,507,171 + -0.5
1,507,171 + +0.9
1,507,171 + +0.7
1,507,171 + +1.0
1,507,171 + +0.5
1,507,172 - -3.2
1,507,227 - -1.9
1,507,283 + +0.2
1,507,379 + -0.2
1,507,379 + +1.1
1,507,379 + +4.1
1,507,380 - +0.2
1,507,380 - -0.2
1,507,380 - +0.6
1,507,406 + -1.1
1,507,423 - +1.4
1,507,453 + Psyr_1329 0.13 -0.9
1,507,513 + Psyr_1329 0.29 +0.2
1,507,513 + Psyr_1329 0.29 -1.1
1,507,514 - Psyr_1329 0.29 +1.2
1,507,514 - Psyr_1329 0.29 -0.3
1,507,514 - Psyr_1329 0.29 +0.2
1,507,514 - Psyr_1329 0.29 +3.2
1,507,757 + -0.6
1,507,757 + +1.2
1,507,758 - -1.3
1,507,804 - +0.6
1,507,804 - -0.3
1,507,962 + Psyr_1330 0.20 +0.6
1,507,963 - Psyr_1330 0.20 +1.4
1,508,031 + Psyr_1330 0.28 +1.7
1,508,049 + Psyr_1330 0.30 -0.7
1,508,049 + Psyr_1330 0.30 -0.9
1,508,050 - Psyr_1330 0.31 +0.2
1,508,050 - Psyr_1330 0.31 +0.7

Or see this region's nucleotide sequence