Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0767

Experiment: KB with Physcion 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0765 and Psyr_0766 are separated by 56 nucleotidesPsyr_0766 and Psyr_0767 are separated by 132 nucleotidesPsyr_0767 and Psyr_0768 are separated by 168 nucleotidesPsyr_0768 and Psyr_0769 are separated by 201 nucleotidesPsyr_0769 and Psyr_0770 are separated by 14 nucleotides Psyr_0765: Psyr_0765 - conserved hypothetical protein, at 871,719 to 872,288 _0765 Psyr_0766: Psyr_0766 - Protein of unknown function DUF1440, at 872,345 to 872,839 _0766 Psyr_0767: Psyr_0767 - transcriptional regulator, LysR family, at 872,972 to 873,892 _0767 Psyr_0768: Psyr_0768 - conserved hypothetical protein, at 874,061 to 874,216 _0768 Psyr_0769: Psyr_0769 - conserved hypothetical membrane-anchored protein, at 874,418 to 874,861 _0769 Psyr_0770: Psyr_0770 - conserved hypothetical protein, at 874,876 to 875,334 _0770 Position (kb) 872 873 874Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 872.071 kb on + strand, within Psyr_0765at 872.071 kb on + strand, within Psyr_0765at 872.072 kb on - strand, within Psyr_0765at 872.072 kb on - strand, within Psyr_0765at 872.196 kb on - strand, within Psyr_0765at 872.196 kb on - strand, within Psyr_0765at 872.196 kb on - strand, within Psyr_0765at 872.275 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strandat 872.276 kb on - strandat 872.276 kb on - strandat 872.276 kb on - strandat 872.277 kb on + strandat 872.278 kb on - strandat 872.278 kb on - strandat 872.303 kb on + strandat 872.304 kb on - strandat 872.394 kb on - strandat 872.576 kb on + strand, within Psyr_0766at 872.576 kb on + strand, within Psyr_0766at 872.577 kb on - strand, within Psyr_0766at 872.577 kb on - strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.589 kb on + strand, within Psyr_0766at 872.590 kb on - strand, within Psyr_0766at 872.590 kb on - strand, within Psyr_0766at 872.590 kb on - strand, within Psyr_0766at 872.640 kb on + strand, within Psyr_0766at 872.640 kb on + strand, within Psyr_0766at 872.661 kb on + strand, within Psyr_0766at 872.661 kb on + strand, within Psyr_0766at 872.661 kb on + strand, within Psyr_0766at 872.661 kb on + strand, within Psyr_0766at 872.662 kb on - strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.667 kb on + strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.668 kb on - strand, within Psyr_0766at 872.762 kb on - strand, within Psyr_0766at 872.824 kb on - strandat 872.824 kb on - strandat 872.859 kb on - strandat 872.859 kb on - strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.905 kb on + strandat 872.906 kb on - strandat 872.906 kb on - strandat 872.906 kb on - strandat 872.906 kb on - strandat 872.906 kb on - strandat 872.922 kb on + strandat 872.999 kb on + strandat 873.000 kb on - strandat 873.439 kb on + strand, within Psyr_0767at 873.439 kb on + strand, within Psyr_0767at 873.753 kb on + strand, within Psyr_0767at 873.753 kb on + strand, within Psyr_0767at 873.753 kb on + strand, within Psyr_0767at 873.754 kb on - strand, within Psyr_0767at 873.754 kb on - strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 874.075 kb on + strandat 874.076 kb on - strandat 874.165 kb on + strand, within Psyr_0768at 874.166 kb on - strand, within Psyr_0768at 874.214 kb on + strandat 874.214 kb on + strandat 874.215 kb on - strandat 874.431 kb on - strandat 874.439 kb on + strandat 874.771 kb on + strand, within Psyr_0769at 874.771 kb on + strand, within Psyr_0769at 874.772 kb on - strand, within Psyr_0769at 874.830 kb on + strandat 874.861 kb on + strandat 874.861 kb on + strandat 874.877 kb on + strandat 874.883 kb on + strandat 874.887 kb on + strandat 874.888 kb on - strandat 874.888 kb on - strandat 874.888 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Physcion 10 mM
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872,071 + Psyr_0765 0.62 -0.9
872,071 + Psyr_0765 0.62 +0.4
872,072 - Psyr_0765 0.62 +2.8
872,072 - Psyr_0765 0.62 -1.2
872,196 - Psyr_0765 0.84 +0.3
872,196 - Psyr_0765 0.84 -0.7
872,196 - Psyr_0765 0.84 -0.6
872,275 + +0.8
872,275 + +0.5
872,275 + +1.1
872,276 - +1.0
872,276 - -0.1
872,276 - +0.3
872,277 + +0.1
872,278 - -0.5
872,278 - -0.1
872,303 + +1.3
872,304 - +0.3
872,394 - +0.0
872,576 + Psyr_0766 0.47 -0.5
872,576 + Psyr_0766 0.47 +1.0
872,577 - Psyr_0766 0.47 +0.7
872,577 - Psyr_0766 0.47 +0.1
872,589 + Psyr_0766 0.49 -0.7
872,589 + Psyr_0766 0.49 -1.3
872,589 + Psyr_0766 0.49 +0.7
872,589 + Psyr_0766 0.49 -0.2
872,589 + Psyr_0766 0.49 -0.6
872,589 + Psyr_0766 0.49 +0.8
872,589 + Psyr_0766 0.49 -0.2
872,590 - Psyr_0766 0.49 -1.8
872,590 - Psyr_0766 0.49 +1.7
872,590 - Psyr_0766 0.49 +1.7
872,640 + Psyr_0766 0.60 +1.1
872,640 + Psyr_0766 0.60 +0.5
872,661 + Psyr_0766 0.64 +1.0
872,661 + Psyr_0766 0.64 -0.5
872,661 + Psyr_0766 0.64 +0.2
872,661 + Psyr_0766 0.64 +1.4
872,662 - Psyr_0766 0.64 -2.2
872,667 + Psyr_0766 0.65 +1.0
872,667 + Psyr_0766 0.65 -0.4
872,667 + Psyr_0766 0.65 -0.4
872,667 + Psyr_0766 0.65 +0.4
872,667 + Psyr_0766 0.65 -1.1
872,667 + Psyr_0766 0.65 -1.3
872,667 + Psyr_0766 0.65 +0.5
872,667 + Psyr_0766 0.65 +0.1
872,667 + Psyr_0766 0.65 -1.2
872,667 + Psyr_0766 0.65 -0.9
872,667 + Psyr_0766 0.65 +0.8
872,667 + Psyr_0766 0.65 +0.8
872,667 + Psyr_0766 0.65 +0.6
872,667 + Psyr_0766 0.65 -0.5
872,667 + Psyr_0766 0.65 -0.6
872,667 + Psyr_0766 0.65 +0.2
872,667 + Psyr_0766 0.65 -0.2
872,667 + Psyr_0766 0.65 -0.5
872,667 + Psyr_0766 0.65 +1.3
872,667 + Psyr_0766 0.65 +1.3
872,667 + Psyr_0766 0.65 +0.3
872,667 + Psyr_0766 0.65 +1.6
872,667 + Psyr_0766 0.65 -1.7
872,667 + Psyr_0766 0.65 +0.4
872,667 + Psyr_0766 0.65 -0.7
872,667 + Psyr_0766 0.65 +1.2
872,667 + Psyr_0766 0.65 +1.7
872,667 + Psyr_0766 0.65 -0.9
872,667 + Psyr_0766 0.65 +1.3
872,667 + Psyr_0766 0.65 -0.2
872,667 + Psyr_0766 0.65 +0.5
872,667 + Psyr_0766 0.65 -1.3
872,667 + Psyr_0766 0.65 -0.8
872,667 + Psyr_0766 0.65 -0.3
872,667 + Psyr_0766 0.65 -0.1
872,667 + Psyr_0766 0.65 -0.0
872,668 - Psyr_0766 0.65 +1.2
872,668 - Psyr_0766 0.65 -0.9
872,668 - Psyr_0766 0.65 +0.9
872,668 - Psyr_0766 0.65 -0.2
872,668 - Psyr_0766 0.65 -2.3
872,668 - Psyr_0766 0.65 +1.2
872,668 - Psyr_0766 0.65 +0.4
872,668 - Psyr_0766 0.65 -0.1
872,668 - Psyr_0766 0.65 +0.0
872,668 - Psyr_0766 0.65 -0.7
872,668 - Psyr_0766 0.65 -0.2
872,668 - Psyr_0766 0.65 +3.8
872,668 - Psyr_0766 0.65 -1.1
872,668 - Psyr_0766 0.65 -0.4
872,668 - Psyr_0766 0.65 -0.4
872,668 - Psyr_0766 0.65 -0.3
872,668 - Psyr_0766 0.65 -0.0
872,668 - Psyr_0766 0.65 +1.3
872,668 - Psyr_0766 0.65 -0.7
872,668 - Psyr_0766 0.65 +1.5
872,668 - Psyr_0766 0.65 -1.8
872,668 - Psyr_0766 0.65 +1.2
872,668 - Psyr_0766 0.65 -1.9
872,668 - Psyr_0766 0.65 -0.3
872,762 - Psyr_0766 0.84 -0.2
872,824 - -1.7
872,824 - +0.2
872,859 - +0.8
872,859 - -0.2
872,905 + +0.8
872,905 + +0.5
872,905 + -0.2
872,905 + +0.3
872,905 + +0.1
872,905 + +0.5
872,905 + -1.1
872,906 - +2.3
872,906 - -1.0
872,906 - -0.2
872,906 - -0.3
872,906 - +0.2
872,922 + +1.3
872,999 + -0.2
873,000 - +0.3
873,439 + Psyr_0767 0.51 -1.5
873,439 + Psyr_0767 0.51 -0.9
873,753 + Psyr_0767 0.85 +0.3
873,753 + Psyr_0767 0.85 +0.9
873,753 + Psyr_0767 0.85 +0.0
873,754 - Psyr_0767 0.85 +1.2
873,754 - Psyr_0767 0.85 +1.4
873,779 + Psyr_0767 0.88 +0.6
873,779 + Psyr_0767 0.88 -1.7
873,779 + Psyr_0767 0.88 -0.2
873,779 + Psyr_0767 0.88 +0.4
873,779 + Psyr_0767 0.88 -1.0
873,779 + Psyr_0767 0.88 +0.5
873,779 + Psyr_0767 0.88 -0.1
873,779 + Psyr_0767 0.88 +0.8
873,779 + Psyr_0767 0.88 +1.3
873,779 + Psyr_0767 0.88 -0.3
873,779 + Psyr_0767 0.88 +1.0
873,780 - Psyr_0767 0.88 +0.6
873,780 - Psyr_0767 0.88 -0.2
873,780 - Psyr_0767 0.88 -0.7
873,780 - Psyr_0767 0.88 +0.4
873,780 - Psyr_0767 0.88 +2.6
874,075 + +0.3
874,076 - -1.3
874,165 + Psyr_0768 0.67 -1.1
874,166 - Psyr_0768 0.67 -0.7
874,214 + -1.0
874,214 + +0.4
874,215 - -0.4
874,431 - -1.1
874,439 + -0.3
874,771 + Psyr_0769 0.80 +0.1
874,771 + Psyr_0769 0.80 +0.1
874,772 - Psyr_0769 0.80 +1.5
874,830 + +0.4
874,861 + -0.3
874,861 + +0.5
874,877 + +0.3
874,883 + +0.6
874,887 + -0.3
874,888 - -0.3
874,888 - -0.4
874,888 - +0.9

Or see this region's nucleotide sequence