Experiment: RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27470 and PS417_27475 are separated by 88 nucleotides PS417_27475 and PS417_27480 overlap by 1 nucleotides PS417_27480 and PS417_27485 are separated by 50 nucleotides PS417_27485 and PS417_27490 are separated by 76 nucleotides
PS417_27470: PS417_27470 - threonine transporter RhtB, at 5,929,106 to 5,929,738
_27470
PS417_27475: PS417_27475 - membrane protein, at 5,929,827 to 5,930,399
_27475
PS417_27480: PS417_27480 - ABC transporter ATP-binding protein, at 5,930,399 to 5,932,309
_27480
PS417_27485: PS417_27485 - hypothetical protein, at 5,932,360 to 5,932,827
_27485
PS417_27490: PS417_27490 - hypothetical protein, at 5,932,904 to 5,933,443
_27490
Position (kb) 5930
5931
5932
5933 Strain fitness (log2 ratio) -2
-1
0
1 at 5929.485 kb on + strand, within PS417_27470 at 5929.486 kb on - strand, within PS417_27470 at 5929.521 kb on + strand, within PS417_27470 at 5929.522 kb on - strand, within PS417_27470 at 5929.522 kb on - strand, within PS417_27470 at 5929.522 kb on - strand, within PS417_27470 at 5929.522 kb on - strand, within PS417_27470 at 5929.620 kb on + strand, within PS417_27470 at 5929.639 kb on - strand, within PS417_27470 at 5929.726 kb on + strand at 5929.778 kb on + strand at 5929.779 kb on - strand at 5929.805 kb on - strand at 5929.813 kb on - strand at 5929.853 kb on + strand at 5929.955 kb on - strand, within PS417_27475 at 5930.311 kb on + strand, within PS417_27475 at 5930.484 kb on - strand at 5930.871 kb on - strand, within PS417_27480 at 5931.175 kb on - strand, within PS417_27480 at 5931.175 kb on - strand, within PS417_27480 at 5931.187 kb on + strand, within PS417_27480 at 5931.525 kb on + strand, within PS417_27480 at 5931.526 kb on - strand, within PS417_27480 at 5931.618 kb on + strand, within PS417_27480 at 5931.630 kb on + strand at 5931.630 kb on + strand, within PS417_27480 at 5931.630 kb on + strand, within PS417_27480 at 5931.726 kb on + strand, within PS417_27480 at 5931.895 kb on + strand, within PS417_27480 at 5931.942 kb on + strand at 5932.284 kb on - strand at 5932.289 kb on + strand at 5932.290 kb on - strand at 5932.290 kb on - strand at 5932.310 kb on - strand at 5932.326 kb on - strand at 5932.359 kb on + strand at 5932.359 kb on + strand at 5932.359 kb on + strand at 5932.359 kb on + strand at 5932.360 kb on - strand at 5932.360 kb on - strand at 5932.360 kb on - strand at 5932.396 kb on + strand at 5932.396 kb on + strand at 5932.396 kb on + strand at 5932.397 kb on - strand at 5932.571 kb on + strand, within PS417_27485 at 5932.572 kb on - strand, within PS417_27485 at 5932.581 kb on - strand, within PS417_27485 at 5932.581 kb on - strand, within PS417_27485 at 5932.826 kb on - strand at 5933.279 kb on + strand, within PS417_27490 at 5933.280 kb on - strand, within PS417_27490
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x remove 5,929,485 + PS417_27470 0.60 -0.1 5,929,486 - PS417_27470 0.60 +0.2 5,929,521 + PS417_27470 0.66 -1.2 5,929,522 - PS417_27470 0.66 +0.5 5,929,522 - PS417_27470 0.66 -1.3 5,929,522 - PS417_27470 0.66 -0.8 5,929,522 - PS417_27470 0.66 -0.2 5,929,620 + PS417_27470 0.81 +0.6 5,929,639 - PS417_27470 0.84 +0.6 5,929,726 + +0.9 5,929,778 + -0.3 5,929,779 - +0.2 5,929,805 - -0.4 5,929,813 - +0.6 5,929,853 + -2.3 5,929,955 - PS417_27475 0.22 -0.1 5,930,311 + PS417_27475 0.84 -0.4 5,930,484 - -1.6 5,930,871 - PS417_27480 0.25 -0.1 5,931,175 - PS417_27480 0.41 +0.5 5,931,175 - PS417_27480 0.41 -0.6 5,931,187 + PS417_27480 0.41 -0.3 5,931,525 + PS417_27480 0.59 +0.4 5,931,526 - PS417_27480 0.59 -1.1 5,931,618 + PS417_27480 0.64 -0.1 5,931,630 + -0.2 5,931,630 + PS417_27480 0.64 -1.2 5,931,630 + PS417_27480 0.64 +0.0 5,931,726 + PS417_27480 0.69 -0.1 5,931,895 + PS417_27480 0.78 -0.1 5,931,942 + -0.3 5,932,284 - -0.0 5,932,289 + +1.4 5,932,290 - +0.8 5,932,290 - +0.0 5,932,310 - -0.7 5,932,326 - -1.2 5,932,359 + +0.7 5,932,359 + -0.5 5,932,359 + -0.5 5,932,359 + -0.7 5,932,360 - +0.4 5,932,360 - -0.4 5,932,360 - -0.2 5,932,396 + +1.0 5,932,396 + -0.4 5,932,396 + -0.2 5,932,397 - -0.3 5,932,571 + PS417_27485 0.45 +0.6 5,932,572 - PS417_27485 0.45 -0.3 5,932,581 - PS417_27485 0.47 -0.1 5,932,581 - PS417_27485 0.47 -0.0 5,932,826 - -0.0 5,933,279 + PS417_27490 0.69 -0.9 5,933,280 - PS417_27490 0.70 +0.3
Or see this region's nucleotide sequence