Experiment: 4-Aminobutyric 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0544 and PP_0545 are separated by 227 nucleotides PP_0545 and PP_0546 are separated by 254 nucleotides
PP_0544: PP_0544 - Ethanolamine transporter, at 630,244 to 631,692
_0544
PP_0545: PP_0545 - aldehyde dehydrogenase, at 631,920 to 633,440
_0545
PP_0546: PP_0546 - sigma-54 dependent transcriptional regulator, at 633,695 to 635,710
_0546
Position (kb) 631
632
633
634 Strain fitness (log2 ratio) -2
-1
0
1
2 at 631.013 kb on + strand, within PP_0544 at 631.130 kb on - strand, within PP_0544 at 631.232 kb on + strand, within PP_0544 at 631.233 kb on - strand at 631.244 kb on + strand, within PP_0544 at 631.244 kb on + strand, within PP_0544 at 631.244 kb on + strand, within PP_0544 at 631.244 kb on + strand, within PP_0544 at 631.245 kb on - strand, within PP_0544 at 631.394 kb on + strand, within PP_0544 at 631.457 kb on + strand, within PP_0544 at 631.457 kb on + strand at 631.458 kb on - strand, within PP_0544 at 631.458 kb on - strand, within PP_0544 at 631.535 kb on + strand, within PP_0544 at 631.554 kb on - strand at 631.554 kb on - strand at 631.580 kb on - strand at 631.623 kb on - strand at 631.692 kb on + strand at 631.692 kb on + strand at 631.850 kb on + strand at 631.850 kb on + strand at 631.851 kb on - strand at 631.884 kb on + strand at 631.922 kb on - strand at 631.949 kb on - strand at 631.949 kb on - strand at 631.978 kb on + strand at 631.978 kb on + strand at 632.057 kb on - strand at 632.065 kb on + strand at 632.066 kb on - strand at 632.066 kb on - strand at 632.290 kb on + strand, within PP_0545 at 632.290 kb on + strand, within PP_0545 at 632.290 kb on + strand, within PP_0545 at 632.290 kb on + strand, within PP_0545 at 632.291 kb on - strand, within PP_0545 at 632.378 kb on - strand, within PP_0545 at 632.378 kb on - strand, within PP_0545 at 632.378 kb on - strand, within PP_0545 at 632.717 kb on + strand, within PP_0545 at 632.785 kb on + strand, within PP_0545 at 632.796 kb on + strand, within PP_0545 at 632.797 kb on - strand, within PP_0545 at 632.844 kb on + strand, within PP_0545 at 632.845 kb on - strand, within PP_0545 at 632.996 kb on - strand, within PP_0545 at 633.281 kb on + strand, within PP_0545 at 633.281 kb on + strand, within PP_0545 at 633.281 kb on + strand, within PP_0545 at 633.282 kb on - strand, within PP_0545 at 633.326 kb on + strand at 633.356 kb on + strand at 633.356 kb on + strand at 633.356 kb on + strand at 633.357 kb on - strand at 633.357 kb on - strand at 633.376 kb on + strand at 633.377 kb on - strand at 633.377 kb on - strand at 633.377 kb on - strand at 633.377 kb on - strand at 633.377 kb on - strand at 633.385 kb on + strand at 633.434 kb on - strand at 633.456 kb on + strand at 633.456 kb on + strand at 633.675 kb on - strand at 633.689 kb on - strand at 633.736 kb on + strand at 633.815 kb on + strand at 633.816 kb on - strand at 634.252 kb on - strand, within PP_0546 at 634.319 kb on + strand, within PP_0546 at 634.319 kb on + strand, within PP_0546 at 634.320 kb on - strand, within PP_0546 at 634.320 kb on - strand, within PP_0546
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Aminobutyric 10 mM (C) remove 631,013 + PP_0544 0.53 -0.3 631,130 - PP_0544 0.61 +1.0 631,232 + PP_0544 0.68 +1.1 631,233 - +1.4 631,244 + PP_0544 0.69 -0.3 631,244 + PP_0544 0.69 -0.7 631,244 + PP_0544 0.69 -1.3 631,244 + PP_0544 0.69 -1.1 631,245 - PP_0544 0.69 +1.5 631,394 + PP_0544 0.79 +1.2 631,457 + PP_0544 0.84 -1.3 631,457 + -0.1 631,458 - PP_0544 0.84 -0.3 631,458 - PP_0544 0.84 +0.6 631,535 + PP_0544 0.89 -2.5 631,554 - +0.7 631,554 - +0.5 631,580 - -2.0 631,623 - -0.3 631,692 + -2.4 631,692 + -0.8 631,850 + -0.4 631,850 + -1.5 631,851 - -0.6 631,884 + -2.0 631,922 - +0.2 631,949 - -0.5 631,949 - -0.1 631,978 + -0.7 631,978 + +0.8 632,057 - -1.3 632,065 + +1.3 632,066 - -1.9 632,066 - -2.0 632,290 + PP_0545 0.24 +0.2 632,290 + PP_0545 0.24 +0.8 632,290 + PP_0545 0.24 +1.3 632,290 + PP_0545 0.24 -0.1 632,291 - PP_0545 0.24 +0.5 632,378 - PP_0545 0.30 +0.7 632,378 - PP_0545 0.30 +1.9 632,378 - PP_0545 0.30 -0.1 632,717 + PP_0545 0.52 +0.8 632,785 + PP_0545 0.57 +0.5 632,796 + PP_0545 0.58 +0.9 632,797 - PP_0545 0.58 +0.4 632,844 + PP_0545 0.61 +0.6 632,845 - PP_0545 0.61 +0.5 632,996 - PP_0545 0.71 +1.0 633,281 + PP_0545 0.89 +2.1 633,281 + PP_0545 0.89 +1.5 633,281 + PP_0545 0.89 +0.3 633,282 - PP_0545 0.90 -1.6 633,326 + +0.5 633,356 + -2.3 633,356 + -1.6 633,356 + -1.8 633,357 - -1.0 633,357 - -0.5 633,376 + +0.6 633,377 - +0.8 633,377 - +0.3 633,377 - -2.5 633,377 - -2.5 633,377 - -1.4 633,385 + +0.5 633,434 - -1.1 633,456 + -0.2 633,456 + -0.4 633,675 - -0.5 633,689 - -0.2 633,736 + +0.4 633,815 + +1.9 633,816 - +0.6 634,252 - PP_0546 0.28 -0.5 634,319 + PP_0546 0.31 +1.2 634,319 + PP_0546 0.31 +0.8 634,320 - PP_0546 0.31 +0.1 634,320 - PP_0546 0.31 +0.6
Or see this region's nucleotide sequence