Strain Fitness in Pseudomonas putida KT2440 around PP_0413

Experiment: 4-Aminobutyric 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0412 and PP_0413 are separated by 60 nucleotidesPP_0413 and PP_0414 are separated by 10 nucleotidesPP_0414 and PP_0415 are separated by 150 nucleotides PP_0412: PP_0412 - Polyamine ABC transporter, periplasmic polyamine-binding protein, at 500,617 to 501,651 _0412 PP_0413: PP_0413 - Polyamine ABC transporter, permease protein, at 501,712 to 502,959 _0413 PP_0414: PP_0414 - Polyamine ABC transporter, permease protein, at 502,970 to 503,797 _0414 PP_0415: PP_0415 - ribulose-5-phosphate 3-epimerase, at 503,948 to 504,622 _0415 Position (kb) 501 502 503Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 500.743 kb on + strand, within PP_0412at 500.744 kb on - strand, within PP_0412at 500.744 kb on - strand, within PP_0412at 500.744 kb on - strand, within PP_0412at 500.744 kb on - strand, within PP_0412at 500.791 kb on + strand, within PP_0412at 500.792 kb on - strand, within PP_0412at 500.792 kb on - strand, within PP_0412at 500.856 kb on - strand, within PP_0412at 500.944 kb on + strand, within PP_0412at 500.945 kb on - strand, within PP_0412at 501.007 kb on + strand, within PP_0412at 501.008 kb on - strand, within PP_0412at 501.008 kb on - strand, within PP_0412at 501.106 kb on + strand, within PP_0412at 501.107 kb on - strand, within PP_0412at 501.158 kb on - strand, within PP_0412at 501.158 kb on - strand, within PP_0412at 501.298 kb on + strand, within PP_0412at 501.310 kb on - strand, within PP_0412at 501.364 kb on + strand, within PP_0412at 501.365 kb on - strand, within PP_0412at 501.422 kb on - strand, within PP_0412at 501.433 kb on + strand, within PP_0412at 501.463 kb on + strand, within PP_0412at 501.463 kb on + strand, within PP_0412at 501.482 kb on - strand, within PP_0412at 501.650 kb on - strandat 501.650 kb on - strandat 501.696 kb on + strandat 501.697 kb on - strandat 501.871 kb on + strand, within PP_0413at 501.872 kb on - strand, within PP_0413at 501.970 kb on + strand, within PP_0413at 501.970 kb on + strand, within PP_0413at 501.971 kb on - strand, within PP_0413at 501.971 kb on - strand, within PP_0413at 501.971 kb on - strand, within PP_0413at 501.971 kb on - strand, within PP_0413at 502.120 kb on + strand, within PP_0413at 502.120 kb on + strand, within PP_0413at 502.120 kb on + strand, within PP_0413at 502.121 kb on - strand, within PP_0413at 502.121 kb on - strand, within PP_0413at 502.121 kb on - strand, within PP_0413at 502.122 kb on + strand, within PP_0413at 502.122 kb on + strand, within PP_0413at 502.123 kb on - strand, within PP_0413at 502.123 kb on - strand, within PP_0413at 502.123 kb on - strand, within PP_0413at 502.168 kb on + strand, within PP_0413at 502.192 kb on - strand, within PP_0413at 502.214 kb on - strand, within PP_0413at 502.214 kb on - strand, within PP_0413at 502.260 kb on - strand, within PP_0413at 502.288 kb on + strand, within PP_0413at 502.338 kb on + strand, within PP_0413at 502.338 kb on + strand, within PP_0413at 502.338 kb on + strand, within PP_0413at 502.339 kb on - strand, within PP_0413at 502.339 kb on - strand, within PP_0413at 502.339 kb on - strand, within PP_0413at 502.357 kb on + strand, within PP_0413at 502.369 kb on + strand, within PP_0413at 502.370 kb on - strand, within PP_0413at 502.370 kb on - strand, within PP_0413at 502.370 kb on - strand, within PP_0413at 502.370 kb on - strand, within PP_0413at 502.452 kb on - strand, within PP_0413at 502.567 kb on + strand, within PP_0413at 502.568 kb on - strand, within PP_0413at 502.568 kb on - strand, within PP_0413at 502.615 kb on + strand, within PP_0413at 502.615 kb on + strand, within PP_0413at 502.615 kb on + strand, within PP_0413at 502.632 kb on + strand, within PP_0413at 502.633 kb on - strand, within PP_0413at 502.645 kb on + strand, within PP_0413at 502.703 kb on - strand, within PP_0413at 502.717 kb on + strand, within PP_0413at 502.718 kb on - strand, within PP_0413at 502.768 kb on + strand, within PP_0413at 502.769 kb on - strand, within PP_0413at 502.771 kb on + strand, within PP_0413at 502.771 kb on + strand, within PP_0413at 502.771 kb on + strand, within PP_0413at 502.771 kb on + strand, within PP_0413at 502.771 kb on + strand, within PP_0413at 502.772 kb on - strand, within PP_0413at 502.772 kb on - strand, within PP_0413at 502.772 kb on - strand, within PP_0413at 502.772 kb on - strand, within PP_0413at 502.772 kb on - strand, within PP_0413at 502.819 kb on + strand, within PP_0413at 502.820 kb on - strand, within PP_0413at 502.834 kb on + strand, within PP_0413at 502.835 kb on - strandat 502.835 kb on - strandat 502.909 kb on + strandat 502.910 kb on - strandat 502.918 kb on + strandat 502.918 kb on + strandat 502.918 kb on + strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.919 kb on - strandat 502.920 kb on + strandat 502.920 kb on + strandat 502.921 kb on - strandat 502.921 kb on - strandat 502.921 kb on - strandat 502.921 kb on - strandat 502.921 kb on - strandat 502.982 kb on + strandat 502.982 kb on + strandat 502.982 kb on + strandat 502.982 kb on + strandat 502.982 kb on + strandat 502.983 kb on - strandat 502.983 kb on - strandat 502.983 kb on - strandat 502.983 kb on - strandat 502.983 kb on - strandat 502.983 kb on - strandat 502.983 kb on - strandat 502.983 kb on - strandat 503.012 kb on + strandat 503.012 kb on + strandat 503.012 kb on + strandat 503.024 kb on - strandat 503.142 kb on - strand, within PP_0414at 503.349 kb on - strand, within PP_0414at 503.349 kb on - strand, within PP_0414at 503.437 kb on + strand, within PP_0414at 503.437 kb on + strand, within PP_0414at 503.438 kb on - strand, within PP_0414at 503.468 kb on + strand, within PP_0414at 503.878 kb on + strandat 503.879 kb on - strandat 503.909 kb on + strandat 503.957 kb on + strandat 503.957 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric 10 mM (C)
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500,743 + PP_0412 0.12 -3.2
500,744 - PP_0412 0.12 -3.5
500,744 - PP_0412 0.12 -2.0
500,744 - PP_0412 0.12 -2.5
500,744 - PP_0412 0.12 -3.0
500,791 + PP_0412 0.17 -2.9
500,792 - PP_0412 0.17 -2.9
500,792 - PP_0412 0.17 -2.5
500,856 - PP_0412 0.23 -0.4
500,944 + PP_0412 0.32 -0.5
500,945 - PP_0412 0.32 -2.0
501,007 + PP_0412 0.38 -2.4
501,008 - PP_0412 0.38 -1.3
501,008 - PP_0412 0.38 -2.5
501,106 + PP_0412 0.47 -2.4
501,107 - PP_0412 0.47 -1.8
501,158 - PP_0412 0.52 -3.4
501,158 - PP_0412 0.52 -3.6
501,298 + PP_0412 0.66 -3.4
501,310 - PP_0412 0.67 -3.0
501,364 + PP_0412 0.72 -2.0
501,365 - PP_0412 0.72 -2.2
501,422 - PP_0412 0.78 -1.0
501,433 + PP_0412 0.79 -3.5
501,463 + PP_0412 0.82 -0.1
501,463 + PP_0412 0.82 -0.4
501,482 - PP_0412 0.84 -3.4
501,650 - -3.1
501,650 - -3.1
501,696 + -4.5
501,697 - -3.2
501,871 + PP_0413 0.13 -4.0
501,872 - PP_0413 0.13 -1.9
501,970 + PP_0413 0.21 -4.2
501,970 + PP_0413 0.21 -4.3
501,971 - PP_0413 0.21 -2.4
501,971 - PP_0413 0.21 -0.1
501,971 - PP_0413 0.21 -2.3
501,971 - PP_0413 0.21 -4.1
502,120 + PP_0413 0.33 -3.4
502,120 + PP_0413 0.33 -2.0
502,120 + PP_0413 0.33 -2.8
502,121 - PP_0413 0.33 -3.1
502,121 - PP_0413 0.33 -0.2
502,121 - PP_0413 0.33 -1.9
502,122 + PP_0413 0.33 -3.1
502,122 + PP_0413 0.33 -2.5
502,123 - PP_0413 0.33 +0.0
502,123 - PP_0413 0.33 -4.0
502,123 - PP_0413 0.33 -1.2
502,168 + PP_0413 0.37 -2.1
502,192 - PP_0413 0.38 -3.4
502,214 - PP_0413 0.40 -2.5
502,214 - PP_0413 0.40 -3.0
502,260 - PP_0413 0.44 -4.0
502,288 + PP_0413 0.46 -3.7
502,338 + PP_0413 0.50 -3.3
502,338 + PP_0413 0.50 -1.1
502,338 + PP_0413 0.50 -4.2
502,339 - PP_0413 0.50 -3.1
502,339 - PP_0413 0.50 -0.4
502,339 - PP_0413 0.50 +0.5
502,357 + PP_0413 0.52 -0.6
502,369 + PP_0413 0.53 -1.3
502,370 - PP_0413 0.53 -2.5
502,370 - PP_0413 0.53 -3.3
502,370 - PP_0413 0.53 -0.1
502,370 - PP_0413 0.53 -3.3
502,452 - PP_0413 0.59 -1.4
502,567 + PP_0413 0.69 -3.2
502,568 - PP_0413 0.69 -3.1
502,568 - PP_0413 0.69 -1.1
502,615 + PP_0413 0.72 -4.3
502,615 + PP_0413 0.72 -2.2
502,615 + PP_0413 0.72 -4.1
502,632 + PP_0413 0.74 -3.7
502,633 - PP_0413 0.74 -3.7
502,645 + PP_0413 0.75 -1.6
502,703 - PP_0413 0.79 -3.0
502,717 + PP_0413 0.81 -3.6
502,718 - PP_0413 0.81 -0.1
502,768 + PP_0413 0.85 -1.4
502,769 - PP_0413 0.85 -0.1
502,771 + PP_0413 0.85 -3.5
502,771 + PP_0413 0.85 -1.8
502,771 + PP_0413 0.85 -2.4
502,771 + PP_0413 0.85 -4.0
502,771 + PP_0413 0.85 -0.9
502,772 - PP_0413 0.85 -1.1
502,772 - PP_0413 0.85 -3.6
502,772 - PP_0413 0.85 -2.3
502,772 - PP_0413 0.85 -0.1
502,772 - PP_0413 0.85 -3.1
502,819 + PP_0413 0.89 -4.1
502,820 - PP_0413 0.89 -2.2
502,834 + PP_0413 0.90 -3.5
502,835 - -4.4
502,835 - -2.6
502,909 + -3.1
502,910 - -3.9
502,918 + -1.4
502,918 + -3.5
502,918 + +0.2
502,919 - -2.9
502,919 - -2.3
502,919 - +1.2
502,919 - -2.9
502,919 - -2.7
502,919 - -3.6
502,919 - -2.5
502,919 - -4.0
502,920 + -4.0
502,920 + -4.4
502,921 - -4.1
502,921 - -0.6
502,921 - -3.8
502,921 - -3.1
502,921 - -2.7
502,982 + -0.5
502,982 + -1.4
502,982 + -4.9
502,982 + -4.6
502,982 + -4.3
502,983 - -3.5
502,983 - -4.1
502,983 - -3.0
502,983 - -0.8
502,983 - -0.9
502,983 - -3.5
502,983 - -4.1
502,983 - -4.6
503,012 + -1.9
503,012 + -3.4
503,012 + -3.3
503,024 - -0.3
503,142 - PP_0414 0.21 -2.9
503,349 - PP_0414 0.46 -4.3
503,349 - PP_0414 0.46 -3.3
503,437 + PP_0414 0.56 -0.8
503,437 + PP_0414 0.56 -3.6
503,438 - PP_0414 0.57 -2.0
503,468 + PP_0414 0.60 -3.7
503,878 + -1.0
503,879 - -0.1
503,909 + +0.3
503,957 + -2.9
503,957 + +2.0

Or see this region's nucleotide sequence