Experiment: RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02720 and PS417_02725 are separated by 150 nucleotides PS417_02725 and PS417_02730 are separated by 359 nucleotides PS417_02730 and PS417_02735 are separated by 201 nucleotides PS417_02735 and PS417_02740 are separated by 98 nucleotides
PS417_02720: PS417_02720 - TetR family transcriptional regulator, at 620,136 to 620,768
_02720
PS417_02725: PS417_02725 - hypothetical protein, at 620,919 to 621,371
_02725
PS417_02730: PS417_02730 - hypothetical protein, at 621,731 to 623,800
_02730
PS417_02735: PS417_02735 - bacterioferritin, at 624,002 to 624,532
_02735
PS417_02740: PS417_02740 - LysR family transcriptional regulator, at 624,631 to 625,530
_02740
Position (kb) 621
622
623
624 Strain fitness (log2 ratio) -1
0
1
2 at 620.809 kb on - strand at 620.921 kb on - strand at 620.921 kb on - strand at 621.154 kb on + strand, within PS417_02725 at 621.209 kb on - strand, within PS417_02725 at 621.336 kb on - strand at 621.340 kb on - strand at 621.357 kb on + strand at 621.440 kb on - strand at 621.465 kb on - strand at 621.563 kb on - strand at 621.675 kb on + strand at 621.676 kb on - strand at 621.676 kb on - strand at 621.677 kb on + strand at 621.678 kb on - strand at 621.678 kb on - strand at 622.406 kb on + strand, within PS417_02730 at 622.760 kb on + strand, within PS417_02730 at 623.018 kb on + strand, within PS417_02730 at 623.019 kb on - strand, within PS417_02730 at 623.019 kb on - strand, within PS417_02730 at 623.489 kb on + strand, within PS417_02730 at 623.489 kb on + strand, within PS417_02730 at 623.489 kb on + strand, within PS417_02730 at 623.490 kb on - strand, within PS417_02730 at 623.490 kb on - strand, within PS417_02730 at 623.490 kb on - strand, within PS417_02730 at 623.588 kb on + strand, within PS417_02730 at 623.588 kb on + strand, within PS417_02730 at 623.830 kb on + strand at 623.883 kb on + strand at 623.884 kb on - strand at 623.896 kb on - strand at 623.902 kb on + strand at 623.902 kb on + strand at 623.903 kb on - strand at 623.903 kb on - strand at 623.903 kb on - strand at 623.933 kb on - strand at 623.949 kb on + strand at 623.950 kb on - strand at 624.003 kb on + strand at 624.020 kb on - strand at 624.094 kb on + strand, within PS417_02735 at 624.105 kb on + strand, within PS417_02735 at 624.105 kb on + strand, within PS417_02735 at 624.105 kb on + strand, within PS417_02735 at 624.106 kb on - strand, within PS417_02735 at 624.106 kb on - strand, within PS417_02735 at 624.106 kb on - strand, within PS417_02735 at 624.163 kb on - strand, within PS417_02735 at 624.196 kb on - strand, within PS417_02735 at 624.263 kb on - strand, within PS417_02735 at 624.360 kb on + strand, within PS417_02735 at 624.380 kb on + strand, within PS417_02735 at 624.381 kb on - strand, within PS417_02735 at 624.546 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 620,809 - +0.9 620,921 - +1.5 620,921 - +0.0 621,154 + PS417_02725 0.52 +0.0 621,209 - PS417_02725 0.64 -0.3 621,336 - -0.1 621,340 - +0.3 621,357 + -0.4 621,440 - +1.0 621,465 - -0.1 621,563 - +0.1 621,675 + +1.6 621,676 - +0.9 621,676 - +0.0 621,677 + -0.1 621,678 - +0.4 621,678 - -0.1 622,406 + PS417_02730 0.33 +1.9 622,760 + PS417_02730 0.50 +0.2 623,018 + PS417_02730 0.62 -0.6 623,019 - PS417_02730 0.62 +0.2 623,019 - PS417_02730 0.62 -1.5 623,489 + PS417_02730 0.85 -0.6 623,489 + PS417_02730 0.85 -0.3 623,489 + PS417_02730 0.85 -0.4 623,490 - PS417_02730 0.85 -0.0 623,490 - PS417_02730 0.85 -0.5 623,490 - PS417_02730 0.85 -0.9 623,588 + PS417_02730 0.90 -0.2 623,588 + PS417_02730 0.90 -0.8 623,830 + +0.2 623,883 + -0.1 623,884 - +0.4 623,896 - +0.6 623,902 + -0.7 623,902 + +1.1 623,903 - +0.4 623,903 - +0.0 623,903 - -0.3 623,933 - +0.0 623,949 + -0.5 623,950 - +1.2 624,003 + -0.8 624,020 - -0.5 624,094 + PS417_02735 0.17 -0.3 624,105 + PS417_02735 0.19 -0.2 624,105 + PS417_02735 0.19 -0.0 624,105 + PS417_02735 0.19 +0.0 624,106 - PS417_02735 0.20 -0.5 624,106 - PS417_02735 0.20 -0.9 624,106 - PS417_02735 0.20 -0.1 624,163 - PS417_02735 0.30 -0.0 624,196 - PS417_02735 0.37 +0.0 624,263 - PS417_02735 0.49 -1.1 624,360 + PS417_02735 0.67 +0.4 624,380 + PS417_02735 0.71 +0.0 624,381 - PS417_02735 0.71 +0.0 624,546 + +0.1
Or see this region's nucleotide sequence