Experiment: LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03555 and PS417_03560 are separated by 392 nucleotides PS417_03560 and PS417_03565 are separated by 21 nucleotides PS417_03565 and PS417_03570 are separated by 167 nucleotides
PS417_03555: PS417_03555 - ATPase AAA, at 810,332 to 811,258
_03555
PS417_03560: PS417_03560 - GTP-binding protein, at 811,651 to 812,751
_03560
PS417_03565: PS417_03565 - peptidyl-tRNA hydrolase, at 812,773 to 813,357
_03565
PS417_03570: PS417_03570 - 50S ribosomal protein L25, at 813,525 to 814,121
_03570
Position (kb) 811
812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 810.688 kb on + strand, within PS417_03555 at 810.757 kb on - strand, within PS417_03555 at 810.905 kb on + strand, within PS417_03555 at 810.905 kb on + strand, within PS417_03555 at 810.906 kb on - strand at 810.939 kb on + strand, within PS417_03555 at 810.939 kb on + strand, within PS417_03555 at 810.939 kb on + strand, within PS417_03555 at 810.940 kb on - strand, within PS417_03555 at 810.940 kb on - strand, within PS417_03555 at 810.940 kb on - strand, within PS417_03555 at 810.940 kb on - strand, within PS417_03555 at 810.942 kb on - strand, within PS417_03555 at 810.942 kb on - strand, within PS417_03555 at 810.942 kb on - strand, within PS417_03555 at 811.099 kb on - strand, within PS417_03555 at 811.099 kb on - strand, within PS417_03555 at 811.105 kb on + strand, within PS417_03555 at 811.106 kb on - strand, within PS417_03555 at 811.120 kb on + strand, within PS417_03555 at 811.121 kb on - strand, within PS417_03555 at 811.161 kb on - strand, within PS417_03555 at 811.298 kb on - strand at 811.437 kb on + strand at 811.922 kb on + strand, within PS417_03560 at 812.135 kb on + strand, within PS417_03560 at 812.135 kb on + strand, within PS417_03560 at 812.135 kb on + strand, within PS417_03560
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 810,688 + PS417_03555 0.38 -1.1 810,757 - PS417_03555 0.46 -0.4 810,905 + PS417_03555 0.62 +1.1 810,905 + PS417_03555 0.62 -1.6 810,906 - -0.4 810,939 + PS417_03555 0.65 -0.0 810,939 + PS417_03555 0.65 -0.4 810,939 + PS417_03555 0.65 +0.1 810,940 - PS417_03555 0.66 +0.1 810,940 - PS417_03555 0.66 +0.3 810,940 - PS417_03555 0.66 -0.2 810,940 - PS417_03555 0.66 -0.0 810,942 - PS417_03555 0.66 -0.1 810,942 - PS417_03555 0.66 +0.3 810,942 - PS417_03555 0.66 +0.3 811,099 - PS417_03555 0.83 +1.0 811,099 - PS417_03555 0.83 -0.0 811,105 + PS417_03555 0.83 +0.5 811,106 - PS417_03555 0.83 -0.1 811,120 + PS417_03555 0.85 +1.6 811,121 - PS417_03555 0.85 -0.5 811,161 - PS417_03555 0.89 +0.2 811,298 - -1.1 811,437 + +1.0 811,922 + PS417_03560 0.25 -0.1 812,135 + PS417_03560 0.44 -0.8 812,135 + PS417_03560 0.44 -2.3 812,135 + PS417_03560 0.44 -2.8
Or see this region's nucleotide sequence