Experiment: LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26635 and PS417_26640 are separated by 330 nucleotides PS417_26640 and PS417_26645 are separated by 274 nucleotides PS417_26645 and PS417_26650 overlap by 8 nucleotides
PS417_26635: PS417_26635 - hypothetical protein, at 5,756,071 to 5,756,310
_26635
PS417_26640: PS417_26640 - hypothetical protein, at 5,756,641 to 5,756,859
_26640
PS417_26645: PS417_26645 - chemotaxis protein, at 5,757,134 to 5,757,589
_26645
PS417_26650: PS417_26650 - histidine kinase, at 5,757,582 to 5,763,386
_26650
Position (kb) 5757
5758 Strain fitness (log2 ratio) -2
-1
0
1 at 5756.272 kb on + strand, within PS417_26635 at 5756.322 kb on + strand at 5756.408 kb on - strand at 5756.498 kb on - strand at 5756.498 kb on - strand at 5756.642 kb on + strand at 5756.652 kb on + strand at 5756.652 kb on + strand at 5756.652 kb on + strand at 5756.652 kb on + strand at 5756.652 kb on + strand at 5756.653 kb on - strand at 5756.653 kb on - strand at 5756.653 kb on - strand at 5756.653 kb on - strand at 5756.653 kb on - strand at 5756.656 kb on + strand at 5756.656 kb on + strand at 5756.656 kb on + strand at 5756.656 kb on + strand at 5756.656 kb on + strand at 5756.656 kb on + strand at 5756.656 kb on + strand at 5756.657 kb on - strand at 5756.657 kb on - strand at 5756.657 kb on - strand at 5756.702 kb on + strand, within PS417_26640 at 5756.702 kb on + strand, within PS417_26640 at 5756.703 kb on - strand, within PS417_26640 at 5756.778 kb on - strand, within PS417_26640 at 5756.778 kb on - strand, within PS417_26640 at 5757.043 kb on - strand at 5757.082 kb on - strand at 5757.125 kb on + strand at 5757.126 kb on - strand at 5757.126 kb on - strand at 5757.135 kb on + strand at 5757.136 kb on - strand at 5757.136 kb on - strand at 5757.136 kb on - strand at 5757.252 kb on + strand, within PS417_26645 at 5757.252 kb on + strand, within PS417_26645 at 5757.311 kb on - strand, within PS417_26645 at 5757.311 kb on - strand, within PS417_26645 at 5758.286 kb on - strand, within PS417_26650 at 5758.301 kb on - strand, within PS417_26650 at 5758.301 kb on - strand, within PS417_26650
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,756,272 + PS417_26635 0.84 +0.2 5,756,322 + +0.0 5,756,408 - -0.2 5,756,498 - -2.7 5,756,498 - +0.2 5,756,642 + +0.3 5,756,652 + -0.2 5,756,652 + +1.1 5,756,652 + +0.3 5,756,652 + +0.3 5,756,652 + +0.4 5,756,653 - -0.2 5,756,653 - +1.3 5,756,653 - -0.2 5,756,653 - -0.9 5,756,653 - -0.1 5,756,656 + +0.4 5,756,656 + +0.2 5,756,656 + -0.3 5,756,656 + -0.4 5,756,656 + +1.0 5,756,656 + -0.5 5,756,656 + -1.0 5,756,657 - -0.2 5,756,657 - +0.1 5,756,657 - +0.0 5,756,702 + PS417_26640 0.28 +0.3 5,756,702 + PS417_26640 0.28 +0.2 5,756,703 - PS417_26640 0.28 -0.5 5,756,778 - PS417_26640 0.63 -0.3 5,756,778 - PS417_26640 0.63 -1.2 5,757,043 - -0.3 5,757,082 - -0.3 5,757,125 + -0.2 5,757,126 - +0.7 5,757,126 - +0.1 5,757,135 + +0.1 5,757,136 - +0.3 5,757,136 - -0.1 5,757,136 - -0.6 5,757,252 + PS417_26645 0.26 -0.4 5,757,252 + PS417_26645 0.26 -1.0 5,757,311 - PS417_26645 0.39 -0.6 5,757,311 - PS417_26645 0.39 -0.9 5,758,286 - PS417_26650 0.12 -0.1 5,758,301 - PS417_26650 0.12 -0.8 5,758,301 - PS417_26650 0.12 -0.2
Or see this region's nucleotide sequence