Experiment: LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26460 and PS417_26465 are separated by 39 nucleotides PS417_26465 and PS417_26470 are separated by 6 nucleotides PS417_26470 and PS417_26475 are separated by 129 nucleotides
PS417_26460: PS417_26460 - NAD-dependent DNA ligase LigB, at 5,722,453 to 5,724,117
_26460
PS417_26465: PS417_26465 - hypothetical protein, at 5,724,157 to 5,724,552
_26465
PS417_26470: PS417_26470 - cytochrome C, at 5,724,559 to 5,725,008
_26470
PS417_26475: PS417_26475 - transglycosylase, at 5,725,138 to 5,726,322
_26475
Position (kb) 5724
5725
5726 Strain fitness (log2 ratio) -1
0
1 at 5723.741 kb on + strand, within PS417_26460 at 5723.742 kb on - strand, within PS417_26460 at 5723.762 kb on + strand, within PS417_26460 at 5723.946 kb on + strand, within PS417_26460 at 5723.947 kb on - strand, within PS417_26460 at 5724.068 kb on + strand at 5724.068 kb on + strand at 5724.069 kb on - strand at 5724.069 kb on - strand at 5724.090 kb on - strand at 5724.490 kb on - strand, within PS417_26465 at 5724.641 kb on + strand, within PS417_26470 at 5724.642 kb on - strand, within PS417_26470 at 5724.983 kb on - strand at 5724.983 kb on - strand at 5725.075 kb on + strand at 5725.075 kb on + strand at 5725.078 kb on + strand at 5725.079 kb on - strand at 5725.081 kb on + strand at 5725.081 kb on + strand at 5725.082 kb on - strand at 5725.137 kb on + strand at 5725.138 kb on - strand at 5725.138 kb on - strand at 5725.138 kb on - strand at 5725.270 kb on + strand, within PS417_26475 at 5725.270 kb on + strand, within PS417_26475 at 5725.270 kb on + strand, within PS417_26475 at 5725.271 kb on - strand, within PS417_26475 at 5725.271 kb on - strand, within PS417_26475 at 5725.271 kb on - strand, within PS417_26475 at 5725.271 kb on - strand, within PS417_26475 at 5725.271 kb on - strand, within PS417_26475 at 5725.271 kb on - strand, within PS417_26475 at 5725.469 kb on + strand, within PS417_26475 at 5725.470 kb on - strand, within PS417_26475 at 5725.513 kb on + strand, within PS417_26475 at 5725.514 kb on - strand, within PS417_26475 at 5725.593 kb on + strand, within PS417_26475 at 5725.611 kb on + strand at 5725.611 kb on + strand, within PS417_26475 at 5725.611 kb on + strand, within PS417_26475 at 5725.611 kb on + strand, within PS417_26475 at 5725.611 kb on + strand, within PS417_26475 at 5725.612 kb on - strand, within PS417_26475 at 5725.612 kb on - strand, within PS417_26475 at 5725.612 kb on - strand, within PS417_26475 at 5725.616 kb on - strand, within PS417_26475 at 5725.675 kb on + strand, within PS417_26475 at 5725.908 kb on + strand, within PS417_26475 at 5725.975 kb on + strand, within PS417_26475 at 5725.975 kb on + strand, within PS417_26475 at 5725.975 kb on + strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475 at 5725.976 kb on - strand, within PS417_26475
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,723,741 + PS417_26460 0.77 -0.1 5,723,742 - PS417_26460 0.77 -0.1 5,723,762 + PS417_26460 0.79 +0.2 5,723,946 + PS417_26460 0.90 -0.2 5,723,947 - PS417_26460 0.90 -0.0 5,724,068 + +0.2 5,724,068 + -0.2 5,724,069 - +1.2 5,724,069 - -0.2 5,724,090 - +0.2 5,724,490 - PS417_26465 0.84 -0.1 5,724,641 + PS417_26470 0.18 -0.9 5,724,642 - PS417_26470 0.18 -1.2 5,724,983 - -0.2 5,724,983 - -0.4 5,725,075 + +0.4 5,725,075 + -1.7 5,725,078 + -0.4 5,725,079 - +0.1 5,725,081 + +1.3 5,725,081 + +0.3 5,725,082 - +0.9 5,725,137 + -0.9 5,725,138 - -0.4 5,725,138 - -1.0 5,725,138 - +0.3 5,725,270 + PS417_26475 0.11 -0.0 5,725,270 + PS417_26475 0.11 -0.4 5,725,270 + PS417_26475 0.11 +0.1 5,725,271 - PS417_26475 0.11 +0.4 5,725,271 - PS417_26475 0.11 -0.4 5,725,271 - PS417_26475 0.11 +0.3 5,725,271 - PS417_26475 0.11 +1.1 5,725,271 - PS417_26475 0.11 +0.3 5,725,271 - PS417_26475 0.11 -0.8 5,725,469 + PS417_26475 0.28 +0.3 5,725,470 - PS417_26475 0.28 -0.4 5,725,513 + PS417_26475 0.32 +0.5 5,725,514 - PS417_26475 0.32 -1.1 5,725,593 + PS417_26475 0.38 -0.0 5,725,611 + +0.6 5,725,611 + PS417_26475 0.40 -0.0 5,725,611 + PS417_26475 0.40 -0.5 5,725,611 + PS417_26475 0.40 -0.9 5,725,611 + PS417_26475 0.40 +1.4 5,725,612 - PS417_26475 0.40 -0.4 5,725,612 - PS417_26475 0.40 -0.7 5,725,612 - PS417_26475 0.40 -0.3 5,725,616 - PS417_26475 0.40 +0.4 5,725,675 + PS417_26475 0.45 +0.9 5,725,908 + PS417_26475 0.65 +0.2 5,725,975 + PS417_26475 0.71 -0.3 5,725,975 + PS417_26475 0.71 -0.4 5,725,975 + PS417_26475 0.71 -0.7 5,725,976 - PS417_26475 0.71 -0.9 5,725,976 - PS417_26475 0.71 +0.4 5,725,976 - PS417_26475 0.71 +1.6 5,725,976 - PS417_26475 0.71 -1.4 5,725,976 - PS417_26475 0.71 -0.6 5,725,976 - PS417_26475 0.71 -1.0 5,725,976 - PS417_26475 0.71 -0.2
Or see this region's nucleotide sequence