Experiment: LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26225 and PS417_26230 are separated by 10 nucleotides PS417_26230 and PS417_26235 overlap by 1 nucleotides
PS417_26225: PS417_26225 - electron transfer flavoprotein subunit beta, at 5,668,044 to 5,668,814
_26225
PS417_26230: PS417_26230 - electron transfer flavoprotein subunit alpha, at 5,668,825 to 5,670,045
_26230
PS417_26235: PS417_26235 - (Fe-S)-binding protein, at 5,670,045 to 5,671,985
_26235
Position (kb) 5668
5669
5670
5671 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5668.192 kb on - strand, within PS417_26225 at 5668.246 kb on - strand, within PS417_26225 at 5668.359 kb on + strand, within PS417_26225 at 5668.567 kb on + strand, within PS417_26225 at 5668.683 kb on + strand, within PS417_26225 at 5668.684 kb on - strand, within PS417_26225 at 5668.684 kb on - strand, within PS417_26225 at 5669.031 kb on - strand, within PS417_26230 at 5669.085 kb on + strand, within PS417_26230 at 5669.087 kb on + strand, within PS417_26230 at 5669.087 kb on + strand at 5669.087 kb on + strand, within PS417_26230 at 5669.088 kb on - strand, within PS417_26230 at 5669.245 kb on + strand, within PS417_26230 at 5669.777 kb on + strand at 5669.777 kb on + strand, within PS417_26230 at 5670.379 kb on + strand, within PS417_26235 at 5670.404 kb on - strand, within PS417_26235 at 5670.404 kb on - strand, within PS417_26235 at 5670.529 kb on + strand, within PS417_26235 at 5670.543 kb on + strand, within PS417_26235 at 5670.544 kb on - strand, within PS417_26235 at 5670.589 kb on + strand at 5670.747 kb on - strand, within PS417_26235 at 5670.792 kb on + strand, within PS417_26235 at 5670.793 kb on - strand, within PS417_26235 at 5670.793 kb on - strand, within PS417_26235 at 5670.793 kb on - strand, within PS417_26235
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,668,192 - PS417_26225 0.19 -1.1 5,668,246 - PS417_26225 0.26 +0.5 5,668,359 + PS417_26225 0.41 +0.3 5,668,567 + PS417_26225 0.68 +0.1 5,668,683 + PS417_26225 0.83 -0.4 5,668,684 - PS417_26225 0.83 -0.4 5,668,684 - PS417_26225 0.83 -1.5 5,669,031 - PS417_26230 0.17 -0.9 5,669,085 + PS417_26230 0.21 +0.0 5,669,087 + PS417_26230 0.21 +0.1 5,669,087 + +2.6 5,669,087 + PS417_26230 0.21 -1.9 5,669,088 - PS417_26230 0.22 -0.0 5,669,245 + PS417_26230 0.34 -1.0 5,669,777 + -0.4 5,669,777 + PS417_26230 0.78 -1.1 5,670,379 + PS417_26235 0.17 -1.9 5,670,404 - PS417_26235 0.18 -1.7 5,670,404 - PS417_26235 0.18 -0.8 5,670,529 + PS417_26235 0.25 -1.0 5,670,543 + PS417_26235 0.26 -0.4 5,670,544 - PS417_26235 0.26 -0.7 5,670,589 + +2.2 5,670,747 - PS417_26235 0.36 +0.3 5,670,792 + PS417_26235 0.38 -0.8 5,670,793 - PS417_26235 0.39 -0.4 5,670,793 - PS417_26235 0.39 -0.3 5,670,793 - PS417_26235 0.39 +0.1
Or see this region's nucleotide sequence