Strain Fitness in Pseudomonas simiae WCS417 around PS417_01435

Experiment: LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01430 and PS417_01435 overlap by 4 nucleotidesPS417_01435 and PS417_01440 overlap by 11 nucleotides PS417_01430: PS417_01430 - chromosome segregation protein SMC, at 317,402 to 319,762 _01430 PS417_01435: PS417_01435 - hypothetical protein, at 319,759 to 320,478 _01435 PS417_01440: PS417_01440 - hypothetical protein, at 320,468 to 321,907 _01440 Position (kb) 319 320 321Strain fitness (log2 ratio) -1 0 1at 318.897 kb on + strand, within PS417_01430at 318.998 kb on + strand, within PS417_01430at 319.299 kb on - strand, within PS417_01430at 319.475 kb on + strand, within PS417_01430at 319.555 kb on + strandat 319.555 kb on + strandat 319.556 kb on - strandat 319.844 kb on + strand, within PS417_01435at 320.902 kb on - strand, within PS417_01440at 321.033 kb on + strand, within PS417_01440

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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318,897 + PS417_01430 0.63 +1.3
318,998 + PS417_01430 0.68 -0.6
319,299 - PS417_01430 0.80 +0.0
319,475 + PS417_01430 0.88 +0.3
319,555 + +0.0
319,555 + +0.4
319,556 - -0.5
319,844 + PS417_01435 0.12 -1.3
320,902 - PS417_01440 0.30 -0.6
321,033 + PS417_01440 0.39 -0.4

Or see this region's nucleotide sequence