Experiment: LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01000 and PS417_01005 are separated by 126 nucleotides PS417_01005 and PS417_01015 are separated by 484 nucleotides
PS417_01000: PS417_01000 - Fis family transcriptional regulator, at 219,549 to 220,475
_01000
PS417_01005: PS417_01005 - methionine ABC transporter substrate-binding protein, at 220,602 to 221,384
_01005
PS417_01015: PS417_01015 - polar amino acid ABC transporter permease, at 221,869 to 222,534
_01015
Position (kb) 220
221
222 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 219.822 kb on + strand, within PS417_01000 at 219.921 kb on + strand, within PS417_01000 at 219.922 kb on - strand, within PS417_01000 at 219.961 kb on + strand, within PS417_01000 at 220.111 kb on - strand, within PS417_01000 at 220.111 kb on - strand, within PS417_01000 at 220.182 kb on + strand, within PS417_01000 at 220.182 kb on + strand, within PS417_01000 at 220.182 kb on + strand, within PS417_01000 at 220.197 kb on + strand, within PS417_01000 at 220.197 kb on + strand, within PS417_01000 at 220.197 kb on + strand, within PS417_01000 at 220.510 kb on + strand at 220.510 kb on + strand at 220.510 kb on + strand at 220.510 kb on + strand at 220.510 kb on + strand at 220.511 kb on - strand at 220.511 kb on - strand at 220.511 kb on - strand at 220.547 kb on - strand at 220.780 kb on - strand, within PS417_01005 at 220.827 kb on + strand, within PS417_01005 at 220.828 kb on - strand, within PS417_01005 at 221.181 kb on + strand, within PS417_01005 at 221.387 kb on + strand at 221.425 kb on - strand at 221.425 kb on - strand at 221.588 kb on - strand at 221.694 kb on + strand at 221.694 kb on + strand at 221.694 kb on + strand at 221.694 kb on + strand at 221.695 kb on - strand at 221.695 kb on - strand at 221.695 kb on - strand at 221.695 kb on - strand at 221.844 kb on + strand at 221.889 kb on + strand at 221.889 kb on + strand at 222.040 kb on + strand, within PS417_01015 at 222.091 kb on + strand, within PS417_01015
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 219,822 + PS417_01000 0.29 -0.6 219,921 + PS417_01000 0.40 -0.3 219,922 - PS417_01000 0.40 +0.2 219,961 + PS417_01000 0.44 -0.4 220,111 - PS417_01000 0.61 +0.2 220,111 - PS417_01000 0.61 +0.2 220,182 + PS417_01000 0.68 +0.1 220,182 + PS417_01000 0.68 -1.9 220,182 + PS417_01000 0.68 +1.1 220,197 + PS417_01000 0.70 +0.0 220,197 + PS417_01000 0.70 +0.1 220,197 + PS417_01000 0.70 -0.2 220,510 + -0.1 220,510 + -0.3 220,510 + -0.4 220,510 + -0.6 220,510 + -0.2 220,511 - +0.1 220,511 - -0.1 220,511 - -0.7 220,547 - -0.0 220,780 - PS417_01005 0.23 -0.4 220,827 + PS417_01005 0.29 -1.0 220,828 - PS417_01005 0.29 -0.2 221,181 + PS417_01005 0.74 -1.6 221,387 + -1.0 221,425 - -2.8 221,425 - +0.9 221,588 - +0.9 221,694 + +0.2 221,694 + +0.2 221,694 + -0.2 221,694 + -0.0 221,695 - -0.4 221,695 - -0.6 221,695 - -1.6 221,695 - -0.4 221,844 + -1.2 221,889 + +0.5 221,889 + -0.5 222,040 + PS417_01015 0.26 +0.4 222,091 + PS417_01015 0.33 -0.1
Or see this region's nucleotide sequence