Experiment: LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05775 and PS417_05780 overlap by 1 nucleotides PS417_05780 and PS417_05785 overlap by 8 nucleotides PS417_05785 and PS417_05790 are separated by 9 nucleotides PS417_05790 and PS417_05795 are separated by 6 nucleotides PS417_05795 and PS417_05800 overlap by 4 nucleotides PS417_05800 and PS417_05805 overlap by 8 nucleotides
PS417_05775: PS417_05775 - tail tape measure protein, at 1,289,845 to 1,291,305
_05775
PS417_05780: PS417_05780 - hypothetical protein, at 1,291,305 to 1,291,688
_05780
PS417_05785: PS417_05785 - tail protein, at 1,291,681 to 1,291,893
_05785
PS417_05790: PS417_05790 - hypothetical protein, at 1,291,903 to 1,292,910
_05790
PS417_05795: PS417_05795 - lysozyme, at 1,292,917 to 1,293,474
_05795
PS417_05800: PS417_05800 - hypothetical protein, at 1,293,471 to 1,293,686
_05800
PS417_05805: PS417_05805 - hypothetical protein, at 1,293,679 to 1,293,885
_05805
Position (kb) 1291
1292
1293 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1291.186 kb on + strand at 1291.334 kb on + strand at 1291.334 kb on + strand at 1291.363 kb on - strand, within PS417_05780 at 1291.564 kb on + strand, within PS417_05780 at 1291.687 kb on - strand at 1291.687 kb on - strand at 1291.698 kb on + strand at 1291.698 kb on + strand at 1291.698 kb on + strand at 1291.739 kb on + strand, within PS417_05785 at 1291.739 kb on + strand, within PS417_05785 at 1291.891 kb on + strand at 1291.918 kb on - strand at 1291.937 kb on - strand at 1292.115 kb on + strand, within PS417_05790 at 1292.422 kb on + strand, within PS417_05790 at 1292.422 kb on + strand, within PS417_05790 at 1292.422 kb on + strand, within PS417_05790 at 1292.563 kb on + strand, within PS417_05790 at 1292.867 kb on - strand at 1293.112 kb on + strand, within PS417_05795 at 1293.112 kb on + strand, within PS417_05795 at 1293.113 kb on - strand, within PS417_05795 at 1293.124 kb on + strand, within PS417_05795 at 1293.124 kb on + strand, within PS417_05795 at 1293.124 kb on + strand, within PS417_05795 at 1293.125 kb on - strand, within PS417_05795 at 1293.125 kb on - strand, within PS417_05795 at 1293.125 kb on - strand, within PS417_05795 at 1293.232 kb on + strand, within PS417_05795 at 1293.232 kb on + strand, within PS417_05795 at 1293.233 kb on - strand at 1293.396 kb on + strand, within PS417_05795 at 1293.397 kb on - strand, within PS417_05795 at 1293.473 kb on - strand at 1293.496 kb on + strand, within PS417_05800 at 1293.496 kb on + strand, within PS417_05800 at 1293.496 kb on + strand, within PS417_05800 at 1293.496 kb on + strand, within PS417_05800 at 1293.496 kb on + strand, within PS417_05800 at 1293.497 kb on - strand, within PS417_05800 at 1293.526 kb on + strand, within PS417_05800 at 1293.689 kb on + strand at 1293.689 kb on + strand at 1293.690 kb on - strand at 1293.699 kb on - strand at 1293.851 kb on + strand, within PS417_05805 at 1293.909 kb on + strand at 1293.909 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 1,291,186 + -0.9 1,291,334 + -0.6 1,291,334 + -1.2 1,291,363 - PS417_05780 0.15 +0.1 1,291,564 + PS417_05780 0.67 -1.0 1,291,687 - -0.0 1,291,687 - +0.5 1,291,698 + -2.3 1,291,698 + -0.8 1,291,698 + -0.7 1,291,739 + PS417_05785 0.27 -0.4 1,291,739 + PS417_05785 0.27 -0.9 1,291,891 + -0.1 1,291,918 - +1.0 1,291,937 - -0.2 1,292,115 + PS417_05790 0.21 -1.1 1,292,422 + PS417_05790 0.51 -1.3 1,292,422 + PS417_05790 0.51 -0.8 1,292,422 + PS417_05790 0.51 -0.8 1,292,563 + PS417_05790 0.65 -1.5 1,292,867 - +0.1 1,293,112 + PS417_05795 0.35 -0.9 1,293,112 + PS417_05795 0.35 -0.1 1,293,113 - PS417_05795 0.35 -0.7 1,293,124 + PS417_05795 0.37 -0.4 1,293,124 + PS417_05795 0.37 +1.4 1,293,124 + PS417_05795 0.37 -0.9 1,293,125 - PS417_05795 0.37 -0.3 1,293,125 - PS417_05795 0.37 -0.1 1,293,125 - PS417_05795 0.37 +0.7 1,293,232 + PS417_05795 0.56 -0.1 1,293,232 + PS417_05795 0.56 -0.6 1,293,233 - +0.6 1,293,396 + PS417_05795 0.86 -1.4 1,293,397 - PS417_05795 0.86 -0.3 1,293,473 - +0.2 1,293,496 + PS417_05800 0.12 -0.1 1,293,496 + PS417_05800 0.12 -0.3 1,293,496 + PS417_05800 0.12 +0.4 1,293,496 + PS417_05800 0.12 -0.9 1,293,496 + PS417_05800 0.12 +0.2 1,293,497 - PS417_05800 0.12 +0.1 1,293,526 + PS417_05800 0.25 -0.2 1,293,689 + +2.2 1,293,689 + -0.0 1,293,690 - -0.0 1,293,699 - -1.2 1,293,851 + PS417_05805 0.83 +0.1 1,293,909 + -0.2 1,293,909 + +0.6
Or see this region's nucleotide sequence