Experiment: KB with d-limonene 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4837 and Psyr_4838 are separated by 86 nucleotides Psyr_4838 and Psyr_4839 overlap by 13 nucleotides Psyr_4839 and Psyr_4840 are separated by 275 nucleotides
Psyr_4837: Psyr_4837 - Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:Heavy metal translocating P-type ATPase, at 5,741,370 to 5,743,628
_4837
Psyr_4838: Psyr_4838 - transcriptional regulator, MerR family, at 5,743,715 to 5,744,161
_4838
Psyr_4839: Psyr_4839 - hypothetical protein, at 5,744,149 to 5,745,078
_4839
Psyr_4840: Psyr_4840 - thymidylate synthase, at 5,745,354 to 5,746,325
_4840
Position (kb) 5744
5745
5746 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5743.497 kb on + strand at 5743.683 kb on + strand at 5743.683 kb on + strand at 5743.769 kb on + strand, within Psyr_4838 at 5743.772 kb on + strand, within Psyr_4838 at 5743.830 kb on - strand, within Psyr_4838 at 5744.312 kb on - strand, within Psyr_4839 at 5744.379 kb on + strand, within Psyr_4839 at 5744.379 kb on + strand, within Psyr_4839 at 5744.379 kb on + strand, within Psyr_4839 at 5744.379 kb on + strand, within Psyr_4839 at 5744.380 kb on - strand, within Psyr_4839 at 5744.380 kb on - strand, within Psyr_4839 at 5744.380 kb on - strand, within Psyr_4839 at 5744.380 kb on - strand, within Psyr_4839 at 5744.380 kb on - strand, within Psyr_4839 at 5744.402 kb on + strand, within Psyr_4839 at 5744.402 kb on + strand, within Psyr_4839 at 5744.403 kb on - strand, within Psyr_4839 at 5744.403 kb on - strand, within Psyr_4839 at 5744.413 kb on - strand, within Psyr_4839 at 5744.413 kb on - strand, within Psyr_4839 at 5744.413 kb on - strand, within Psyr_4839 at 5744.413 kb on - strand, within Psyr_4839 at 5744.510 kb on + strand, within Psyr_4839 at 5744.511 kb on - strand, within Psyr_4839 at 5744.592 kb on + strand, within Psyr_4839 at 5744.624 kb on + strand, within Psyr_4839 at 5744.624 kb on + strand, within Psyr_4839 at 5744.624 kb on + strand, within Psyr_4839 at 5744.719 kb on + strand, within Psyr_4839 at 5744.720 kb on - strand, within Psyr_4839 at 5744.720 kb on - strand, within Psyr_4839 at 5744.798 kb on - strand, within Psyr_4839 at 5744.945 kb on + strand, within Psyr_4839 at 5744.945 kb on + strand, within Psyr_4839 at 5744.945 kb on + strand, within Psyr_4839 at 5744.945 kb on + strand, within Psyr_4839 at 5744.945 kb on + strand, within Psyr_4839 at 5744.946 kb on - strand, within Psyr_4839 at 5744.949 kb on + strand, within Psyr_4839 at 5744.949 kb on + strand, within Psyr_4839 at 5744.949 kb on + strand, within Psyr_4839 at 5744.949 kb on + strand, within Psyr_4839 at 5744.949 kb on + strand, within Psyr_4839 at 5744.950 kb on - strand, within Psyr_4839 at 5744.950 kb on - strand, within Psyr_4839 at 5744.950 kb on - strand, within Psyr_4839 at 5744.950 kb on - strand, within Psyr_4839 at 5744.950 kb on - strand, within Psyr_4839 at 5744.972 kb on + strand, within Psyr_4839 at 5744.972 kb on + strand, within Psyr_4839 at 5744.972 kb on + strand, within Psyr_4839 at 5744.972 kb on + strand, within Psyr_4839 at 5744.972 kb on + strand, within Psyr_4839 at 5744.972 kb on + strand, within Psyr_4839 at 5744.972 kb on + strand, within Psyr_4839 at 5744.973 kb on - strand, within Psyr_4839 at 5744.973 kb on - strand, within Psyr_4839 at 5744.973 kb on - strand, within Psyr_4839 at 5744.973 kb on - strand, within Psyr_4839 at 5744.990 kb on + strand at 5744.991 kb on - strand at 5745.008 kb on + strand at 5745.052 kb on + strand at 5745.068 kb on - strand at 5745.080 kb on + strand at 5745.081 kb on - strand at 5745.081 kb on - strand at 5745.252 kb on + strand at 5745.253 kb on - strand at 5745.253 kb on - strand at 5745.311 kb on + strand at 5745.322 kb on + strand at 5745.322 kb on + strand at 5745.323 kb on - strand at 5745.323 kb on - strand at 5745.323 kb on - strand at 5745.324 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with d-limonene 10 mM remove 5,743,497 + +0.6 5,743,683 + +0.2 5,743,683 + +0.9 5,743,769 + Psyr_4838 0.12 +0.8 5,743,772 + Psyr_4838 0.13 +0.4 5,743,830 - Psyr_4838 0.26 +0.0 5,744,312 - Psyr_4839 0.18 +0.6 5,744,379 + Psyr_4839 0.25 +0.4 5,744,379 + Psyr_4839 0.25 -0.7 5,744,379 + Psyr_4839 0.25 -0.9 5,744,379 + Psyr_4839 0.25 -0.4 5,744,380 - Psyr_4839 0.25 +0.9 5,744,380 - Psyr_4839 0.25 -0.7 5,744,380 - Psyr_4839 0.25 -0.2 5,744,380 - Psyr_4839 0.25 -0.4 5,744,380 - Psyr_4839 0.25 -1.6 5,744,402 + Psyr_4839 0.27 -0.5 5,744,402 + Psyr_4839 0.27 +0.3 5,744,403 - Psyr_4839 0.27 +0.2 5,744,403 - Psyr_4839 0.27 -2.4 5,744,413 - Psyr_4839 0.28 -2.0 5,744,413 - Psyr_4839 0.28 +0.2 5,744,413 - Psyr_4839 0.28 +2.1 5,744,413 - Psyr_4839 0.28 +0.5 5,744,510 + Psyr_4839 0.39 +1.5 5,744,511 - Psyr_4839 0.39 -1.3 5,744,592 + Psyr_4839 0.48 +1.1 5,744,624 + Psyr_4839 0.51 -0.1 5,744,624 + Psyr_4839 0.51 -0.6 5,744,624 + Psyr_4839 0.51 -0.1 5,744,719 + Psyr_4839 0.61 -0.0 5,744,720 - Psyr_4839 0.61 -1.7 5,744,720 - Psyr_4839 0.61 -0.6 5,744,798 - Psyr_4839 0.70 -0.3 5,744,945 + Psyr_4839 0.86 -0.3 5,744,945 + Psyr_4839 0.86 -0.1 5,744,945 + Psyr_4839 0.86 +0.3 5,744,945 + Psyr_4839 0.86 -0.9 5,744,945 + Psyr_4839 0.86 -0.4 5,744,946 - Psyr_4839 0.86 +0.8 5,744,949 + Psyr_4839 0.86 +0.6 5,744,949 + Psyr_4839 0.86 -1.2 5,744,949 + Psyr_4839 0.86 +2.2 5,744,949 + Psyr_4839 0.86 +1.0 5,744,949 + Psyr_4839 0.86 -1.9 5,744,950 - Psyr_4839 0.86 +1.5 5,744,950 - Psyr_4839 0.86 +0.7 5,744,950 - Psyr_4839 0.86 -1.3 5,744,950 - Psyr_4839 0.86 -0.0 5,744,950 - Psyr_4839 0.86 -0.7 5,744,972 + Psyr_4839 0.88 +1.5 5,744,972 + Psyr_4839 0.88 -1.2 5,744,972 + Psyr_4839 0.88 +0.3 5,744,972 + Psyr_4839 0.88 -2.5 5,744,972 + Psyr_4839 0.88 -0.3 5,744,972 + Psyr_4839 0.88 -0.8 5,744,972 + Psyr_4839 0.88 +1.8 5,744,973 - Psyr_4839 0.89 -0.2 5,744,973 - Psyr_4839 0.89 -0.7 5,744,973 - Psyr_4839 0.89 -1.1 5,744,973 - Psyr_4839 0.89 +0.7 5,744,990 + +0.4 5,744,991 - -1.0 5,745,008 + +1.0 5,745,052 + -0.6 5,745,068 - -0.2 5,745,080 + +3.5 5,745,081 - -0.4 5,745,081 - +0.9 5,745,252 + +1.6 5,745,253 - -0.3 5,745,253 - +0.9 5,745,311 + -0.7 5,745,322 + +0.2 5,745,322 + +0.1 5,745,323 - -1.5 5,745,323 - +0.5 5,745,323 - +1.1 5,745,324 + -0.0
Or see this region's nucleotide sequence