Experiment: KB with d-limonene 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4626 and Psyr_4627 overlap by 4 nucleotides Psyr_4627 and Psyr_4628 are separated by 95 nucleotides Psyr_4628 and Psyr_4629 overlap by 1 nucleotides Psyr_4629 and Psyr_4630 are separated by 23 nucleotides
Psyr_4626: Psyr_4626 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 5,486,650 to 5,487,639
_4626
Psyr_4627: Psyr_4627 - dimethyladenosine transferase, at 5,487,636 to 5,488,442
_4627
Psyr_4628: Psyr_4628 - Protein of unknown function DUF525, at 5,488,538 to 5,488,939
_4628
Psyr_4629: Psyr_4629 - Bis(5'-nucleosyl)-tetraphosphatase (symmetrical), at 5,488,939 to 5,489,814
_4629
Psyr_4630: Psyr_4630 - thiosulfate sulfurtransferase, at 5,489,838 to 5,490,158
_4630
Position (kb) 5488
5489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5487.648 kb on + strand at 5487.973 kb on - strand, within Psyr_4627 at 5487.973 kb on - strand, within Psyr_4627 at 5487.973 kb on - strand, within Psyr_4627 at 5488.122 kb on + strand, within Psyr_4627 at 5488.457 kb on + strand at 5488.457 kb on + strand at 5488.457 kb on + strand at 5488.457 kb on + strand at 5488.457 kb on + strand at 5488.457 kb on + strand at 5488.458 kb on - strand at 5488.458 kb on - strand at 5488.458 kb on - strand at 5488.458 kb on - strand at 5488.458 kb on - strand at 5488.488 kb on + strand at 5488.488 kb on + strand at 5488.488 kb on + strand at 5488.489 kb on - strand at 5488.489 kb on - strand at 5488.489 kb on - strand at 5488.489 kb on - strand at 5488.489 kb on - strand at 5488.489 kb on - strand at 5488.489 kb on - strand at 5488.497 kb on + strand at 5488.497 kb on + strand at 5488.498 kb on - strand at 5488.507 kb on + strand at 5488.538 kb on - strand at 5488.553 kb on + strand at 5488.553 kb on + strand at 5488.652 kb on + strand, within Psyr_4628 at 5488.652 kb on + strand, within Psyr_4628 at 5488.684 kb on - strand, within Psyr_4628 at 5488.801 kb on + strand, within Psyr_4628 at 5488.801 kb on + strand, within Psyr_4628 at 5488.801 kb on + strand, within Psyr_4628 at 5488.801 kb on + strand, within Psyr_4628 at 5488.805 kb on + strand, within Psyr_4628 at 5488.805 kb on + strand, within Psyr_4628 at 5488.805 kb on + strand, within Psyr_4628 at 5488.805 kb on + strand, within Psyr_4628 at 5488.805 kb on + strand, within Psyr_4628 at 5488.805 kb on + strand, within Psyr_4628 at 5488.805 kb on + strand, within Psyr_4628 at 5488.805 kb on + strand, within Psyr_4628 at 5488.805 kb on + strand, within Psyr_4628 at 5488.805 kb on + strand, within Psyr_4628 at 5488.805 kb on + strand, within Psyr_4628 at 5488.805 kb on + strand, within Psyr_4628 at 5488.806 kb on - strand, within Psyr_4628 at 5488.816 kb on + strand, within Psyr_4628 at 5488.856 kb on + strand, within Psyr_4628 at 5488.856 kb on + strand, within Psyr_4628
Per-strain Table
Position Strand Gene LocusTag Fraction KB with d-limonene 10 mM remove 5,487,648 + +0.1 5,487,973 - Psyr_4627 0.42 -1.9 5,487,973 - Psyr_4627 0.42 +1.1 5,487,973 - Psyr_4627 0.42 -1.1 5,488,122 + Psyr_4627 0.60 -3.0 5,488,457 + -0.9 5,488,457 + +0.6 5,488,457 + -1.4 5,488,457 + -1.3 5,488,457 + +0.4 5,488,457 + -0.6 5,488,458 - -0.2 5,488,458 - +1.4 5,488,458 - +1.8 5,488,458 - +3.4 5,488,458 - -0.3 5,488,488 + +0.1 5,488,488 + +0.9 5,488,488 + -0.3 5,488,489 - +0.4 5,488,489 - -1.3 5,488,489 - -2.1 5,488,489 - +0.8 5,488,489 - -0.4 5,488,489 - -0.6 5,488,489 - -0.4 5,488,497 + -0.1 5,488,497 + +1.4 5,488,498 - +0.6 5,488,507 + +1.6 5,488,538 - -0.8 5,488,553 + -0.9 5,488,553 + -0.9 5,488,652 + Psyr_4628 0.28 -1.5 5,488,652 + Psyr_4628 0.28 +0.0 5,488,684 - Psyr_4628 0.36 -0.8 5,488,801 + Psyr_4628 0.65 +0.6 5,488,801 + Psyr_4628 0.65 -0.1 5,488,801 + Psyr_4628 0.65 +1.4 5,488,801 + Psyr_4628 0.65 -0.4 5,488,805 + Psyr_4628 0.66 +0.6 5,488,805 + Psyr_4628 0.66 -0.5 5,488,805 + Psyr_4628 0.66 +0.1 5,488,805 + Psyr_4628 0.66 +0.7 5,488,805 + Psyr_4628 0.66 +0.8 5,488,805 + Psyr_4628 0.66 -0.1 5,488,805 + Psyr_4628 0.66 +0.5 5,488,805 + Psyr_4628 0.66 +1.9 5,488,805 + Psyr_4628 0.66 +2.4 5,488,805 + Psyr_4628 0.66 +0.5 5,488,805 + Psyr_4628 0.66 -0.2 5,488,805 + Psyr_4628 0.66 -0.2 5,488,806 - Psyr_4628 0.67 +0.8 5,488,816 + Psyr_4628 0.69 -1.0 5,488,856 + Psyr_4628 0.79 -0.1 5,488,856 + Psyr_4628 0.79 -0.4
Or see this region's nucleotide sequence