Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3294

Experiment: KB with d-limonene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3292 and Psyr_3293 are separated by 130 nucleotidesPsyr_3293 and Psyr_3294 are separated by 69 nucleotidesPsyr_3294 and Psyr_3295 are separated by 204 nucleotides Psyr_3292: Psyr_3292 - conserved hypothetical protein, at 3,939,635 to 3,940,072 _3292 Psyr_3293: Psyr_3293 - UspA, at 3,940,203 to 3,940,643 _3293 Psyr_3294: Psyr_3294 - ABC transporter, at 3,940,713 to 3,942,623 _3294 Psyr_3295: Psyr_3295 - SLT, at 3,942,828 to 3,944,756 _3295 Position (kb) 3940 3941 3942 3943Strain fitness (log2 ratio) -3 -2 -1 0 1at 3939.738 kb on + strand, within Psyr_3292at 3939.879 kb on + strand, within Psyr_3292at 3939.880 kb on - strand, within Psyr_3292at 3940.073 kb on - strandat 3940.166 kb on + strandat 3940.209 kb on + strandat 3940.210 kb on - strandat 3940.210 kb on - strandat 3940.561 kb on + strand, within Psyr_3293at 3940.817 kb on - strandat 3940.915 kb on + strand, within Psyr_3294at 3940.916 kb on - strand, within Psyr_3294at 3940.916 kb on - strand, within Psyr_3294at 3940.916 kb on - strand, within Psyr_3294at 3940.916 kb on - strand, within Psyr_3294at 3941.362 kb on + strand, within Psyr_3294at 3941.473 kb on + strand, within Psyr_3294at 3941.474 kb on - strand, within Psyr_3294at 3942.323 kb on - strand, within Psyr_3294at 3942.477 kb on + strandat 3942.478 kb on - strandat 3942.662 kb on + strandat 3942.728 kb on - strandat 3942.728 kb on - strandat 3942.785 kb on - strandat 3942.789 kb on + strandat 3942.789 kb on + strandat 3942.789 kb on + strandat 3942.789 kb on + strandat 3942.789 kb on + strandat 3942.789 kb on + strandat 3942.790 kb on - strandat 3942.790 kb on - strandat 3942.790 kb on - strandat 3942.795 kb on + strandat 3942.925 kb on - strandat 3942.925 kb on - strandat 3942.928 kb on - strandat 3942.981 kb on + strandat 3942.981 kb on + strandat 3942.981 kb on + strandat 3942.982 kb on - strandat 3942.982 kb on - strandat 3942.982 kb on - strandat 3942.982 kb on - strandat 3942.982 kb on - strandat 3943.179 kb on + strand, within Psyr_3295at 3943.179 kb on + strand, within Psyr_3295at 3943.179 kb on + strand, within Psyr_3295at 3943.180 kb on - strand, within Psyr_3295at 3943.180 kb on - strand, within Psyr_3295at 3943.407 kb on + strand, within Psyr_3295at 3943.408 kb on - strand, within Psyr_3295at 3943.408 kb on - strand, within Psyr_3295at 3943.408 kb on - strand, within Psyr_3295at 3943.408 kb on - strand, within Psyr_3295at 3943.408 kb on - strand, within Psyr_3295at 3943.408 kb on - strand, within Psyr_3295at 3943.408 kb on - strand, within Psyr_3295at 3943.408 kb on - strand, within Psyr_3295at 3943.525 kb on + strand, within Psyr_3295at 3943.614 kb on + strand, within Psyr_3295

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with d-limonene 10 mM
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3,939,738 + Psyr_3292 0.24 -2.4
3,939,879 + Psyr_3292 0.56 +0.8
3,939,880 - Psyr_3292 0.56 -3.2
3,940,073 - +0.7
3,940,166 + -1.6
3,940,209 + -2.0
3,940,210 - +1.3
3,940,210 - -1.0
3,940,561 + Psyr_3293 0.81 -0.2
3,940,817 - +0.8
3,940,915 + Psyr_3294 0.11 +0.4
3,940,916 - Psyr_3294 0.11 +0.6
3,940,916 - Psyr_3294 0.11 +1.0
3,940,916 - Psyr_3294 0.11 -0.9
3,940,916 - Psyr_3294 0.11 +0.0
3,941,362 + Psyr_3294 0.34 -0.6
3,941,473 + Psyr_3294 0.40 +1.6
3,941,474 - Psyr_3294 0.40 -0.0
3,942,323 - Psyr_3294 0.84 +0.2
3,942,477 + -0.7
3,942,478 - +0.2
3,942,662 + -0.3
3,942,728 - -0.5
3,942,728 - +0.5
3,942,785 - -1.0
3,942,789 + +0.4
3,942,789 + +1.2
3,942,789 + -0.8
3,942,789 + -1.0
3,942,789 + -0.3
3,942,789 + +0.8
3,942,790 - -0.4
3,942,790 - +0.2
3,942,790 - -1.0
3,942,795 + +0.3
3,942,925 - +0.2
3,942,925 - -0.3
3,942,928 - +0.9
3,942,981 + -0.6
3,942,981 + -0.3
3,942,981 + -0.2
3,942,982 - -1.6
3,942,982 - -0.4
3,942,982 - -0.3
3,942,982 - +0.1
3,942,982 - -0.1
3,943,179 + Psyr_3295 0.18 -0.1
3,943,179 + Psyr_3295 0.18 -0.8
3,943,179 + Psyr_3295 0.18 +1.2
3,943,180 - Psyr_3295 0.18 +0.2
3,943,180 - Psyr_3295 0.18 +0.1
3,943,407 + Psyr_3295 0.30 -1.6
3,943,408 - Psyr_3295 0.30 -2.2
3,943,408 - Psyr_3295 0.30 +0.7
3,943,408 - Psyr_3295 0.30 +0.2
3,943,408 - Psyr_3295 0.30 -0.3
3,943,408 - Psyr_3295 0.30 -1.1
3,943,408 - Psyr_3295 0.30 +0.2
3,943,408 - Psyr_3295 0.30 -0.1
3,943,408 - Psyr_3295 0.30 -1.0
3,943,525 + Psyr_3295 0.36 +0.4
3,943,614 + Psyr_3295 0.41 -0.7

Or see this region's nucleotide sequence