Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3067

Experiment: KB with d-limonene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3065 and Psyr_3066 are separated by 51 nucleotidesPsyr_3066 and Psyr_3067 overlap by 4 nucleotidesPsyr_3067 and Psyr_3068 are separated by 85 nucleotides Psyr_3065: Psyr_3065 - luciferase, at 3,665,181 to 3,666,359 _3065 Psyr_3066: Psyr_3066 - conserved hypothetical protein, at 3,666,411 to 3,667,268 _3066 Psyr_3067: Psyr_3067 - conserved hypothetical protein, at 3,667,265 to 3,668,044 _3067 Psyr_3068: Psyr_3068 - 2-nitropropane dioxygenase, NPD, at 3,668,130 to 3,669,101 _3068 Position (kb) 3667 3668 3669Strain fitness (log2 ratio) -1 0 1 2 3 4at 3666.352 kb on + strandat 3666.412 kb on + strandat 3666.622 kb on + strand, within Psyr_3066at 3666.622 kb on + strand, within Psyr_3066at 3666.622 kb on + strand, within Psyr_3066at 3666.623 kb on - strand, within Psyr_3066at 3666.623 kb on - strand, within Psyr_3066at 3666.623 kb on - strand, within Psyr_3066at 3666.623 kb on - strand, within Psyr_3066at 3666.623 kb on - strand, within Psyr_3066at 3666.623 kb on - strand, within Psyr_3066at 3666.623 kb on - strand, within Psyr_3066at 3666.646 kb on + strand, within Psyr_3066at 3666.646 kb on + strand, within Psyr_3066at 3666.646 kb on + strand, within Psyr_3066at 3666.646 kb on + strand, within Psyr_3066at 3666.647 kb on - strand, within Psyr_3066at 3666.837 kb on - strand, within Psyr_3066at 3666.837 kb on - strand, within Psyr_3066at 3666.938 kb on + strand, within Psyr_3066at 3667.361 kb on + strand, within Psyr_3067at 3667.361 kb on + strand, within Psyr_3067at 3667.362 kb on - strand, within Psyr_3067at 3667.362 kb on - strand, within Psyr_3067at 3667.400 kb on + strand, within Psyr_3067at 3667.401 kb on - strand, within Psyr_3067at 3667.401 kb on - strand, within Psyr_3067at 3667.663 kb on + strand, within Psyr_3067at 3667.664 kb on - strand, within Psyr_3067at 3667.664 kb on - strand, within Psyr_3067at 3667.799 kb on + strand, within Psyr_3067at 3667.800 kb on - strand, within Psyr_3067at 3667.800 kb on - strand, within Psyr_3067at 3668.287 kb on + strand, within Psyr_3068at 3668.287 kb on + strand, within Psyr_3068at 3668.685 kb on + strand, within Psyr_3068at 3668.686 kb on - strand, within Psyr_3068at 3668.796 kb on + strand, within Psyr_3068at 3668.796 kb on + strand, within Psyr_3068at 3668.796 kb on + strand, within Psyr_3068at 3668.797 kb on - strand, within Psyr_3068at 3668.797 kb on - strand, within Psyr_3068at 3668.797 kb on - strand, within Psyr_3068at 3668.797 kb on - strand, within Psyr_3068

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with d-limonene 10 mM
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3,666,352 + +0.6
3,666,412 + +1.0
3,666,622 + Psyr_3066 0.25 +0.5
3,666,622 + Psyr_3066 0.25 +1.5
3,666,622 + Psyr_3066 0.25 -0.7
3,666,623 - Psyr_3066 0.25 +3.6
3,666,623 - Psyr_3066 0.25 -1.1
3,666,623 - Psyr_3066 0.25 -0.4
3,666,623 - Psyr_3066 0.25 -0.9
3,666,623 - Psyr_3066 0.25 -0.6
3,666,623 - Psyr_3066 0.25 -0.2
3,666,623 - Psyr_3066 0.25 -0.6
3,666,646 + Psyr_3066 0.27 +0.3
3,666,646 + Psyr_3066 0.27 -0.9
3,666,646 + Psyr_3066 0.27 +2.8
3,666,646 + Psyr_3066 0.27 -1.3
3,666,647 - Psyr_3066 0.28 -0.2
3,666,837 - Psyr_3066 0.50 +0.4
3,666,837 - Psyr_3066 0.50 +1.2
3,666,938 + Psyr_3066 0.61 +1.3
3,667,361 + Psyr_3067 0.12 +1.3
3,667,361 + Psyr_3067 0.12 -1.2
3,667,362 - Psyr_3067 0.12 -1.1
3,667,362 - Psyr_3067 0.12 +2.1
3,667,400 + Psyr_3067 0.17 -0.0
3,667,401 - Psyr_3067 0.17 -0.5
3,667,401 - Psyr_3067 0.17 -1.1
3,667,663 + Psyr_3067 0.51 +0.3
3,667,664 - Psyr_3067 0.51 +0.5
3,667,664 - Psyr_3067 0.51 -0.9
3,667,799 + Psyr_3067 0.68 +4.3
3,667,800 - Psyr_3067 0.69 +0.0
3,667,800 - Psyr_3067 0.69 -0.7
3,668,287 + Psyr_3068 0.16 +1.3
3,668,287 + Psyr_3068 0.16 -0.2
3,668,685 + Psyr_3068 0.57 -1.3
3,668,686 - Psyr_3068 0.57 +1.0
3,668,796 + Psyr_3068 0.69 +0.7
3,668,796 + Psyr_3068 0.69 +3.1
3,668,796 + Psyr_3068 0.69 +0.5
3,668,797 - Psyr_3068 0.69 -1.2
3,668,797 - Psyr_3068 0.69 +0.3
3,668,797 - Psyr_3068 0.69 -0.1
3,668,797 - Psyr_3068 0.69 -0.5

Or see this region's nucleotide sequence