Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1964

Experiment: KB with d-limonene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1963 and Psyr_1964 are separated by 66 nucleotidesPsyr_1964 and Psyr_1965 are separated by 47 nucleotides Psyr_1963: Psyr_1963 - Cyclic peptide transporter, at 2,273,616 to 2,275,292 _1963 Psyr_1964: Psyr_1964 - Protein of unknown function DUF323, at 2,275,359 to 2,276,225 _1964 Psyr_1965: Psyr_1965 - Twin-arginine translocation pathway signal, at 2,276,273 to 2,277,553 _1965 Position (kb) 2275 2276 2277Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2274.448 kb on + strand, within Psyr_1963at 2274.448 kb on + strand, within Psyr_1963at 2274.448 kb on + strand, within Psyr_1963at 2274.449 kb on - strand, within Psyr_1963at 2274.449 kb on - strand, within Psyr_1963at 2274.704 kb on - strand, within Psyr_1963at 2275.048 kb on + strand, within Psyr_1963at 2275.401 kb on + strandat 2275.401 kb on + strandat 2275.402 kb on - strandat 2275.534 kb on + strand, within Psyr_1964at 2275.535 kb on - strand, within Psyr_1964at 2275.535 kb on - strand, within Psyr_1964at 2275.535 kb on - strand, within Psyr_1964at 2275.588 kb on + strand, within Psyr_1964at 2275.589 kb on - strand, within Psyr_1964at 2275.589 kb on - strand, within Psyr_1964at 2275.589 kb on - strand, within Psyr_1964at 2275.612 kb on + strand, within Psyr_1964at 2275.612 kb on + strand, within Psyr_1964at 2275.613 kb on - strand, within Psyr_1964at 2275.634 kb on - strand, within Psyr_1964at 2275.685 kb on - strand, within Psyr_1964at 2275.810 kb on + strand, within Psyr_1964at 2275.811 kb on - strand, within Psyr_1964at 2275.811 kb on - strand, within Psyr_1964at 2275.943 kb on + strand, within Psyr_1964at 2275.945 kb on + strand, within Psyr_1964at 2275.945 kb on + strand, within Psyr_1964at 2275.946 kb on - strand, within Psyr_1964at 2275.946 kb on - strand, within Psyr_1964at 2275.946 kb on - strand, within Psyr_1964at 2275.946 kb on - strand, within Psyr_1964at 2276.530 kb on - strand, within Psyr_1965at 2276.530 kb on - strand, within Psyr_1965at 2276.778 kb on + strand, within Psyr_1965at 2276.778 kb on + strand, within Psyr_1965at 2276.778 kb on + strand, within Psyr_1965at 2276.779 kb on - strand, within Psyr_1965at 2276.779 kb on - strand, within Psyr_1965at 2276.847 kb on + strand, within Psyr_1965at 2276.847 kb on + strand, within Psyr_1965at 2276.848 kb on - strand, within Psyr_1965at 2277.162 kb on + strand, within Psyr_1965

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with d-limonene 10 mM
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2,274,448 + Psyr_1963 0.50 -1.3
2,274,448 + Psyr_1963 0.50 +0.2
2,274,448 + Psyr_1963 0.50 -0.2
2,274,449 - Psyr_1963 0.50 -1.3
2,274,449 - Psyr_1963 0.50 +0.5
2,274,704 - Psyr_1963 0.65 -3.3
2,275,048 + Psyr_1963 0.85 -0.2
2,275,401 + +1.2
2,275,401 + +0.8
2,275,402 - -0.5
2,275,534 + Psyr_1964 0.20 +0.3
2,275,535 - Psyr_1964 0.20 -0.1
2,275,535 - Psyr_1964 0.20 +0.5
2,275,535 - Psyr_1964 0.20 -0.9
2,275,588 + Psyr_1964 0.26 -0.3
2,275,589 - Psyr_1964 0.27 +4.1
2,275,589 - Psyr_1964 0.27 +3.2
2,275,589 - Psyr_1964 0.27 +0.5
2,275,612 + Psyr_1964 0.29 -2.1
2,275,612 + Psyr_1964 0.29 -1.3
2,275,613 - Psyr_1964 0.29 -1.0
2,275,634 - Psyr_1964 0.32 +0.4
2,275,685 - Psyr_1964 0.38 -1.0
2,275,810 + Psyr_1964 0.52 -0.7
2,275,811 - Psyr_1964 0.52 +2.5
2,275,811 - Psyr_1964 0.52 +0.0
2,275,943 + Psyr_1964 0.67 -2.9
2,275,945 + Psyr_1964 0.68 +1.5
2,275,945 + Psyr_1964 0.68 -0.9
2,275,946 - Psyr_1964 0.68 -0.1
2,275,946 - Psyr_1964 0.68 +0.1
2,275,946 - Psyr_1964 0.68 -0.3
2,275,946 - Psyr_1964 0.68 -0.0
2,276,530 - Psyr_1965 0.20 +0.7
2,276,530 - Psyr_1965 0.20 +0.1
2,276,778 + Psyr_1965 0.39 -1.1
2,276,778 + Psyr_1965 0.39 -0.2
2,276,778 + Psyr_1965 0.39 +0.4
2,276,779 - Psyr_1965 0.40 +0.7
2,276,779 - Psyr_1965 0.40 -0.6
2,276,847 + Psyr_1965 0.45 -1.7
2,276,847 + Psyr_1965 0.45 -2.1
2,276,848 - Psyr_1965 0.45 -0.8
2,277,162 + Psyr_1965 0.69 +0.2

Or see this region's nucleotide sequence