Experiment: KB with d-limonene 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0755 and Psyr_0756 are separated by 377 nucleotides Psyr_0756 and Psyr_0757 are separated by 292 nucleotides
Psyr_0755: Psyr_0755 - conserved hypothetical protein, at 860,098 to 860,538
_0755
Psyr_0756: Psyr_0756 - indole-3-glycerol phosphate synthase, at 860,916 to 861,716
_0756
Psyr_0757: Psyr_0757 - transcriptional regulator, LacI family, at 862,009 to 863,001
_0757
Position (kb) 860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 860.022 kb on + strand at 860.100 kb on - strand at 860.100 kb on - strand at 860.198 kb on + strand, within Psyr_0755 at 860.198 kb on + strand, within Psyr_0755 at 860.198 kb on + strand, within Psyr_0755 at 860.198 kb on + strand, within Psyr_0755 at 860.198 kb on + strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.199 kb on - strand, within Psyr_0755 at 860.284 kb on + strand, within Psyr_0755 at 860.285 kb on - strand, within Psyr_0755 at 860.285 kb on - strand, within Psyr_0755 at 860.390 kb on + strand, within Psyr_0755 at 860.390 kb on + strand, within Psyr_0755 at 860.390 kb on + strand, within Psyr_0755 at 860.390 kb on + strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.391 kb on - strand, within Psyr_0755 at 860.394 kb on + strand, within Psyr_0755 at 860.394 kb on + strand, within Psyr_0755 at 860.395 kb on - strand, within Psyr_0755 at 860.395 kb on - strand, within Psyr_0755 at 860.395 kb on - strand, within Psyr_0755 at 860.395 kb on - strand, within Psyr_0755 at 860.395 kb on - strand, within Psyr_0755 at 860.433 kb on + strand, within Psyr_0755 at 860.434 kb on - strand, within Psyr_0755 at 860.436 kb on - strand, within Psyr_0755 at 860.436 kb on - strand, within Psyr_0755 at 860.448 kb on + strand, within Psyr_0755 at 860.448 kb on + strand, within Psyr_0755 at 860.449 kb on - strand, within Psyr_0755 at 860.449 kb on - strand, within Psyr_0755 at 860.449 kb on - strand, within Psyr_0755 at 860.522 kb on + strand at 860.542 kb on + strand at 860.542 kb on + strand at 860.543 kb on - strand at 860.597 kb on + strand at 860.598 kb on - strand at 860.609 kb on + strand at 860.610 kb on - strand at 860.628 kb on + strand at 860.628 kb on + strand at 860.628 kb on + strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.629 kb on - strand at 860.684 kb on + strand at 860.684 kb on + strand at 860.684 kb on + strand at 860.685 kb on - strand at 860.685 kb on - strand at 860.685 kb on - strand at 860.685 kb on - strand at 860.685 kb on - strand at 860.685 kb on - strand at 860.685 kb on - strand at 860.688 kb on + strand at 860.688 kb on + strand at 860.688 kb on + strand at 860.689 kb on - strand at 860.689 kb on - strand at 860.689 kb on - strand at 860.689 kb on - strand at 860.714 kb on - strand at 860.714 kb on - strand at 860.727 kb on - strand at 860.733 kb on + strand at 860.734 kb on - strand at 860.734 kb on - strand at 860.738 kb on + strand at 860.739 kb on - strand at 860.741 kb on + strand at 860.783 kb on + strand at 860.797 kb on - strand at 860.816 kb on + strand at 860.880 kb on - strand at 860.902 kb on + strand at 860.938 kb on + strand at 860.962 kb on + strand at 861.040 kb on - strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.293 kb on + strand, within Psyr_0756 at 861.294 kb on - strand, within Psyr_0756 at 861.294 kb on - strand, within Psyr_0756 at 861.297 kb on + strand, within Psyr_0756 at 861.297 kb on + strand, within Psyr_0756 at 861.297 kb on + strand, within Psyr_0756 at 861.298 kb on - strand, within Psyr_0756 at 861.298 kb on - strand, within Psyr_0756 at 861.298 kb on - strand, within Psyr_0756 at 861.306 kb on + strand, within Psyr_0756 at 861.306 kb on + strand, within Psyr_0756 at 861.306 kb on + strand, within Psyr_0756 at 861.306 kb on + strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.307 kb on - strand, within Psyr_0756 at 861.337 kb on + strand, within Psyr_0756 at 861.338 kb on - strand, within Psyr_0756 at 861.488 kb on + strand, within Psyr_0756 at 861.503 kb on + strand, within Psyr_0756 at 861.503 kb on + strand, within Psyr_0756 at 861.504 kb on - strand, within Psyr_0756 at 861.514 kb on + strand, within Psyr_0756 at 861.514 kb on + strand, within Psyr_0756 at 861.515 kb on - strand, within Psyr_0756 at 861.596 kb on + strand, within Psyr_0756 at 861.597 kb on - strand, within Psyr_0756 at 861.632 kb on + strand, within Psyr_0756 at 861.633 kb on - strand, within Psyr_0756 at 861.633 kb on - strand, within Psyr_0756 at 861.721 kb on + strand at 861.721 kb on + strand at 861.721 kb on + strand at 861.721 kb on + strand at 861.722 kb on - strand at 861.722 kb on - strand at 861.788 kb on + strand at 861.788 kb on + strand at 861.788 kb on + strand at 861.789 kb on - strand at 861.789 kb on - strand at 861.789 kb on - strand at 861.829 kb on + strand at 861.830 kb on - strand at 861.830 kb on - strand at 861.859 kb on + strand at 861.859 kb on + strand at 861.860 kb on - strand at 861.870 kb on + strand at 861.870 kb on + strand at 861.955 kb on + strand at 861.994 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with d-limonene 10 mM remove 860,022 + -1.2 860,100 - -0.0 860,100 - -0.5 860,198 + Psyr_0755 0.23 +0.4 860,198 + Psyr_0755 0.23 +0.3 860,198 + Psyr_0755 0.23 +1.0 860,198 + Psyr_0755 0.23 -0.9 860,198 + Psyr_0755 0.23 -0.2 860,199 - Psyr_0755 0.23 +2.1 860,199 - Psyr_0755 0.23 -1.0 860,199 - Psyr_0755 0.23 +0.8 860,199 - Psyr_0755 0.23 +0.1 860,199 - Psyr_0755 0.23 -1.0 860,199 - Psyr_0755 0.23 -0.3 860,199 - Psyr_0755 0.23 +0.4 860,284 + Psyr_0755 0.42 -0.1 860,285 - Psyr_0755 0.42 -0.0 860,285 - Psyr_0755 0.42 +1.8 860,390 + Psyr_0755 0.66 -0.8 860,390 + Psyr_0755 0.66 +1.8 860,390 + Psyr_0755 0.66 -0.9 860,390 + Psyr_0755 0.66 -0.2 860,391 - Psyr_0755 0.66 -0.0 860,391 - Psyr_0755 0.66 -0.9 860,391 - Psyr_0755 0.66 +0.2 860,391 - Psyr_0755 0.66 +0.9 860,391 - Psyr_0755 0.66 -0.6 860,391 - Psyr_0755 0.66 +0.1 860,391 - Psyr_0755 0.66 -1.9 860,394 + Psyr_0755 0.67 -3.5 860,394 + Psyr_0755 0.67 -1.0 860,395 - Psyr_0755 0.67 +0.9 860,395 - Psyr_0755 0.67 -0.3 860,395 - Psyr_0755 0.67 -0.8 860,395 - Psyr_0755 0.67 +0.4 860,395 - Psyr_0755 0.67 -1.1 860,433 + Psyr_0755 0.76 -1.1 860,434 - Psyr_0755 0.76 -0.9 860,436 - Psyr_0755 0.77 +0.2 860,436 - Psyr_0755 0.77 +1.4 860,448 + Psyr_0755 0.79 +1.4 860,448 + Psyr_0755 0.79 -0.1 860,449 - Psyr_0755 0.80 -0.8 860,449 - Psyr_0755 0.80 +0.3 860,449 - Psyr_0755 0.80 -0.4 860,522 + -3.0 860,542 + +0.1 860,542 + +1.3 860,543 - +0.7 860,597 + -0.0 860,598 - -1.6 860,609 + -1.1 860,610 - +1.0 860,628 + +0.2 860,628 + +0.1 860,628 + -0.6 860,629 - -0.7 860,629 - +0.0 860,629 - +0.9 860,629 - -0.5 860,629 - -1.5 860,629 - -0.9 860,629 - +0.6 860,629 - -1.3 860,684 + -0.7 860,684 + +0.8 860,684 + -0.8 860,685 - +0.3 860,685 - -1.0 860,685 - -0.3 860,685 - +1.5 860,685 - +0.1 860,685 - +0.9 860,685 - +0.2 860,688 + +0.5 860,688 + -0.3 860,688 + +0.1 860,689 - +0.4 860,689 - -1.5 860,689 - +0.5 860,689 - +0.9 860,714 - -0.2 860,714 - +0.5 860,727 - -0.2 860,733 + +0.4 860,734 - -0.7 860,734 - -0.6 860,738 + -0.9 860,739 - +0.2 860,741 + +0.1 860,783 + +0.5 860,797 - -0.4 860,816 + +0.2 860,880 - +1.0 860,902 + -1.2 860,938 + +0.5 860,962 + +0.6 861,040 - Psyr_0756 0.15 -0.2 861,293 + Psyr_0756 0.47 -0.5 861,293 + Psyr_0756 0.47 +0.2 861,293 + Psyr_0756 0.47 +0.4 861,293 + Psyr_0756 0.47 -0.7 861,294 - Psyr_0756 0.47 +1.0 861,294 - Psyr_0756 0.47 -1.7 861,297 + Psyr_0756 0.48 +0.3 861,297 + Psyr_0756 0.48 +0.1 861,297 + Psyr_0756 0.48 +0.1 861,298 - Psyr_0756 0.48 +0.3 861,298 - Psyr_0756 0.48 -0.6 861,298 - Psyr_0756 0.48 -0.4 861,306 + Psyr_0756 0.49 -0.8 861,306 + Psyr_0756 0.49 -1.8 861,306 + Psyr_0756 0.49 +1.0 861,306 + Psyr_0756 0.49 -1.1 861,307 - Psyr_0756 0.49 -1.4 861,307 - Psyr_0756 0.49 +3.4 861,307 - Psyr_0756 0.49 +0.7 861,307 - Psyr_0756 0.49 -1.7 861,307 - Psyr_0756 0.49 +0.2 861,307 - Psyr_0756 0.49 +0.3 861,337 + Psyr_0756 0.53 +0.1 861,338 - Psyr_0756 0.53 -1.1 861,488 + Psyr_0756 0.71 +1.9 861,503 + Psyr_0756 0.73 +0.1 861,503 + Psyr_0756 0.73 -0.3 861,504 - Psyr_0756 0.73 +0.5 861,514 + Psyr_0756 0.75 -0.7 861,514 + Psyr_0756 0.75 -1.1 861,515 - Psyr_0756 0.75 -0.7 861,596 + Psyr_0756 0.85 -0.6 861,597 - Psyr_0756 0.85 -1.3 861,632 + Psyr_0756 0.89 -1.2 861,633 - Psyr_0756 0.90 -1.8 861,633 - Psyr_0756 0.90 -0.4 861,721 + -0.2 861,721 + +1.0 861,721 + +1.4 861,721 + -0.5 861,722 - +0.5 861,722 - -0.1 861,788 + +1.0 861,788 + -0.8 861,788 + +1.0 861,789 - +1.3 861,789 - +0.6 861,789 - +4.7 861,829 + +0.8 861,830 - -0.7 861,830 - -1.1 861,859 + +1.2 861,859 + +0.3 861,860 - -0.5 861,870 + +0.4 861,870 + -0.0 861,955 + -0.8 861,994 - +0.1
Or see this region's nucleotide sequence