Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0497

Experiment: KB with d-limonene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0496 and Psyr_0497 are separated by 15 nucleotidesPsyr_0497 and Psyr_0498 are separated by 2 nucleotidesPsyr_0498 and Psyr_0499 are separated by 9 nucleotides Psyr_0496: Psyr_0496 - membrane protein, putative, at 538,075 to 539,307 _0496 Psyr_0497: Psyr_0497 - LamB/YcsF, at 539,323 to 540,087 _0497 Psyr_0498: Psyr_0498 - Protein of unknown function DUF1445, at 540,090 to 540,884 _0498 Psyr_0499: Psyr_0499 - Urea amidolyase-related protein, at 540,894 to 542,498 _0499 Position (kb) 539 540 541Strain fitness (log2 ratio) -2 -1 0 1 2 3at 538.675 kb on + strand, within Psyr_0496at 538.675 kb on + strand, within Psyr_0496at 538.675 kb on + strand, within Psyr_0496at 538.676 kb on - strand, within Psyr_0496at 538.677 kb on + strand, within Psyr_0496at 538.677 kb on + strand, within Psyr_0496at 538.677 kb on + strand, within Psyr_0496at 538.684 kb on + strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.685 kb on - strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.742 kb on + strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.743 kb on - strand, within Psyr_0496at 538.792 kb on + strand, within Psyr_0496at 538.792 kb on + strand, within Psyr_0496at 538.793 kb on - strand, within Psyr_0496at 538.793 kb on - strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.796 kb on + strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.797 kb on - strand, within Psyr_0496at 538.969 kb on + strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.970 kb on - strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.971 kb on + strand, within Psyr_0496at 538.972 kb on - strand, within Psyr_0496at 538.972 kb on - strand, within Psyr_0496at 538.972 kb on - strand, within Psyr_0496at 539.066 kb on + strand, within Psyr_0496at 539.067 kb on - strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.068 kb on + strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.069 kb on - strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.161 kb on + strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.162 kb on - strand, within Psyr_0496at 539.254 kb on + strandat 539.254 kb on + strandat 539.254 kb on + strandat 539.255 kb on - strandat 539.255 kb on - strandat 539.333 kb on + strandat 539.334 kb on - strandat 539.334 kb on - strandat 539.334 kb on - strandat 539.532 kb on - strand, within Psyr_0497at 539.590 kb on + strand, within Psyr_0497at 539.591 kb on - strand, within Psyr_0497at 539.644 kb on + strand, within Psyr_0497at 539.645 kb on - strand, within Psyr_0497at 539.645 kb on - strand, within Psyr_0497at 539.668 kb on + strand, within Psyr_0497at 539.668 kb on + strand, within Psyr_0497at 539.668 kb on + strand, within Psyr_0497at 539.669 kb on - strand, within Psyr_0497at 539.669 kb on - strand, within Psyr_0497at 539.669 kb on - strand, within Psyr_0497at 539.669 kb on - strand, within Psyr_0497at 539.669 kb on - strand, within Psyr_0497at 539.669 kb on - strand, within Psyr_0497at 540.229 kb on - strand, within Psyr_0498at 540.229 kb on - strand, within Psyr_0498at 540.229 kb on - strand, within Psyr_0498at 540.870 kb on + strandat 540.870 kb on + strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.871 kb on - strandat 540.873 kb on + strandat 540.874 kb on - strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.880 kb on + strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.881 kb on - strandat 540.882 kb on + strandat 540.883 kb on - strandat 540.883 kb on - strandat 540.883 kb on - strandat 540.883 kb on - strandat 540.883 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with d-limonene 10 mM
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538,675 + Psyr_0496 0.49 -1.2
538,675 + Psyr_0496 0.49 +0.8
538,675 + Psyr_0496 0.49 -1.0
538,676 - Psyr_0496 0.49 -1.9
538,677 + Psyr_0496 0.49 -0.0
538,677 + Psyr_0496 0.49 -2.3
538,677 + Psyr_0496 0.49 -1.8
538,684 + Psyr_0496 0.49 -0.6
538,685 - Psyr_0496 0.49 +0.4
538,685 - Psyr_0496 0.49 +0.2
538,742 + Psyr_0496 0.54 +1.5
538,742 + Psyr_0496 0.54 +0.2
538,742 + Psyr_0496 0.54 +0.4
538,742 + Psyr_0496 0.54 +0.2
538,742 + Psyr_0496 0.54 +0.0
538,742 + Psyr_0496 0.54 -2.4
538,742 + Psyr_0496 0.54 -0.2
538,742 + Psyr_0496 0.54 -0.6
538,743 - Psyr_0496 0.54 -0.9
538,743 - Psyr_0496 0.54 -0.5
538,743 - Psyr_0496 0.54 +1.3
538,743 - Psyr_0496 0.54 -0.2
538,743 - Psyr_0496 0.54 -0.3
538,792 + Psyr_0496 0.58 +0.5
538,792 + Psyr_0496 0.58 -0.1
538,793 - Psyr_0496 0.58 -0.7
538,793 - Psyr_0496 0.58 -0.1
538,796 + Psyr_0496 0.58 -0.9
538,796 + Psyr_0496 0.58 -0.1
538,796 + Psyr_0496 0.58 +0.2
538,796 + Psyr_0496 0.58 -0.8
538,797 - Psyr_0496 0.59 -0.8
538,797 - Psyr_0496 0.59 +3.0
538,797 - Psyr_0496 0.59 +1.4
538,969 + Psyr_0496 0.73 +0.1
538,970 - Psyr_0496 0.73 +1.4
538,970 - Psyr_0496 0.73 -2.2
538,970 - Psyr_0496 0.73 -1.5
538,970 - Psyr_0496 0.73 +0.1
538,970 - Psyr_0496 0.73 -0.9
538,971 + Psyr_0496 0.73 +0.5
538,971 + Psyr_0496 0.73 +2.2
538,972 - Psyr_0496 0.73 +0.7
538,972 - Psyr_0496 0.73 +0.3
538,972 - Psyr_0496 0.73 +0.6
539,066 + Psyr_0496 0.80 -0.3
539,067 - Psyr_0496 0.80 +0.1
539,068 + Psyr_0496 0.81 +0.2
539,068 + Psyr_0496 0.81 +1.4
539,068 + Psyr_0496 0.81 -0.9
539,068 + Psyr_0496 0.81 -0.9
539,068 + Psyr_0496 0.81 +2.4
539,068 + Psyr_0496 0.81 -1.6
539,068 + Psyr_0496 0.81 +1.6
539,068 + Psyr_0496 0.81 -0.3
539,069 - Psyr_0496 0.81 +2.2
539,069 - Psyr_0496 0.81 -1.9
539,069 - Psyr_0496 0.81 -1.4
539,069 - Psyr_0496 0.81 +2.2
539,069 - Psyr_0496 0.81 -0.4
539,069 - Psyr_0496 0.81 -0.6
539,069 - Psyr_0496 0.81 -0.6
539,069 - Psyr_0496 0.81 -1.2
539,069 - Psyr_0496 0.81 +0.6
539,069 - Psyr_0496 0.81 -0.5
539,161 + Psyr_0496 0.88 -1.9
539,161 + Psyr_0496 0.88 -0.5
539,161 + Psyr_0496 0.88 -0.0
539,162 - Psyr_0496 0.88 -0.2
539,162 - Psyr_0496 0.88 +1.8
539,162 - Psyr_0496 0.88 +1.4
539,162 - Psyr_0496 0.88 +2.4
539,162 - Psyr_0496 0.88 +0.2
539,254 + +0.2
539,254 + -0.9
539,254 + +0.8
539,255 - +3.0
539,255 - +0.1
539,333 + +1.5
539,334 - +1.1
539,334 - +2.4
539,334 - +0.1
539,532 - Psyr_0497 0.27 +1.4
539,590 + Psyr_0497 0.35 +1.4
539,591 - Psyr_0497 0.35 +1.4
539,644 + Psyr_0497 0.42 -0.2
539,645 - Psyr_0497 0.42 -1.7
539,645 - Psyr_0497 0.42 +1.6
539,668 + Psyr_0497 0.45 -0.0
539,668 + Psyr_0497 0.45 +0.9
539,668 + Psyr_0497 0.45 +2.4
539,669 - Psyr_0497 0.45 +0.7
539,669 - Psyr_0497 0.45 +1.0
539,669 - Psyr_0497 0.45 -2.2
539,669 - Psyr_0497 0.45 -0.4
539,669 - Psyr_0497 0.45 +0.8
539,669 - Psyr_0497 0.45 -0.2
540,229 - Psyr_0498 0.17 -0.7
540,229 - Psyr_0498 0.17 -1.9
540,229 - Psyr_0498 0.17 -2.0
540,870 + +0.5
540,870 + -0.6
540,871 - +2.1
540,871 - -0.1
540,871 - +1.5
540,873 + +0.9
540,874 - -0.4
540,880 + -0.0
540,880 + +0.4
540,880 + -0.6
540,880 + -1.0
540,880 + -1.8
540,880 + -0.5
540,880 + +0.2
540,881 - -1.9
540,881 - -1.2
540,881 - +0.5
540,881 - -0.8
540,881 - -0.4
540,881 - +1.1
540,881 - +0.2
540,881 - -1.1
540,881 - +0.4
540,881 - -1.0
540,882 + -0.1
540,883 - -0.4
540,883 - -1.1
540,883 - +0.3
540,883 - +0.4
540,883 - -0.7

Or see this region's nucleotide sequence