Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03460 and PS417_03465 are separated by 34 nucleotides PS417_03465 and PS417_03470 overlap by 4 nucleotides PS417_03470 and PS417_03475 overlap by 14 nucleotides PS417_03475 and PS417_03480 overlap by 4 nucleotides PS417_03480 and PS417_03485 overlap by 4 nucleotides
PS417_03460: PS417_03460 - type III secretion protein HrpI, at 795,034 to 797,127
_03460
PS417_03465: PS417_03465 - type III secretion protein, at 797,162 to 798,061
_03465
PS417_03470: PS417_03470 - ATP synthase, at 798,058 to 799,416
_03470
PS417_03475: PS417_03475 - type III secretion protein, at 799,403 to 799,831
_03475
PS417_03480: PS417_03480 - type III secretion protein, at 799,828 to 800,286
_03480
PS417_03485: PS417_03485 - type III secretion protein, at 800,283 to 801,296
_03485
Position (kb) 798
799
800 Strain fitness (log2 ratio) -1
0
1
2 at 797.404 kb on - strand, within PS417_03465 at 797.521 kb on + strand, within PS417_03465 at 797.522 kb on - strand, within PS417_03465 at 798.045 kb on - strand at 798.743 kb on + strand, within PS417_03470 at 799.015 kb on + strand, within PS417_03470 at 799.015 kb on + strand, within PS417_03470 at 799.016 kb on - strand, within PS417_03470 at 799.232 kb on - strand, within PS417_03470 at 799.402 kb on + strand at 799.402 kb on + strand at 799.403 kb on - strand at 799.617 kb on + strand, within PS417_03475 at 799.618 kb on - strand, within PS417_03475 at 799.618 kb on - strand, within PS417_03475 at 799.800 kb on + strand at 799.800 kb on + strand at 800.096 kb on - strand, within PS417_03480
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x remove 797,404 - PS417_03465 0.27 +1.7 797,521 + PS417_03465 0.40 -0.5 797,522 - PS417_03465 0.40 -1.1 798,045 - -1.1 798,743 + PS417_03470 0.50 +1.0 799,015 + PS417_03470 0.70 -0.1 799,015 + PS417_03470 0.70 +0.5 799,016 - PS417_03470 0.70 +0.7 799,232 - PS417_03470 0.86 +0.1 799,402 + +0.7 799,402 + -0.7 799,403 - -0.3 799,617 + PS417_03475 0.50 +1.5 799,618 - PS417_03475 0.50 +0.0 799,618 - PS417_03475 0.50 +0.9 799,800 + -0.7 799,800 + -1.1 800,096 - PS417_03480 0.58 +1.8
Or see this region's nucleotide sequence