Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02870 and PS417_02875 are separated by 93 nucleotides PS417_02875 and PS417_02880 are separated by 11 nucleotides PS417_02880 and PS417_02885 are separated by 47 nucleotides PS417_02885 and PS417_02890 are separated by 262 nucleotides
PS417_02870: PS417_02870 - TonB-dependent receptor, at 656,099 to 658,168
_02870
PS417_02875: PS417_02875 - hypothetical protein, at 658,262 to 658,651
_02875
PS417_02880: PS417_02880 - copper chaperone, at 658,663 to 659,145
_02880
PS417_02885: PS417_02885 - hypothetical protein, at 659,193 to 659,588
_02885
PS417_02890: PS417_02890 - cobalt-precorrin-6X reductase, at 659,851 to 660,570
_02890
Position (kb) 658
659
660 Strain fitness (log2 ratio) -1
0
1
2 at 657.777 kb on + strand, within PS417_02870 at 657.778 kb on - strand, within PS417_02870 at 657.778 kb on - strand, within PS417_02870 at 657.795 kb on + strand, within PS417_02870 at 658.133 kb on - strand at 658.133 kb on - strand at 658.135 kb on - strand at 658.191 kb on + strand at 658.246 kb on + strand at 658.247 kb on - strand at 658.517 kb on - strand, within PS417_02875 at 658.664 kb on + strand at 658.877 kb on - strand, within PS417_02880 at 659.076 kb on - strand, within PS417_02880 at 659.285 kb on + strand, within PS417_02885 at 659.303 kb on - strand, within PS417_02885 at 659.303 kb on - strand, within PS417_02885 at 659.303 kb on - strand, within PS417_02885 at 659.470 kb on - strand, within PS417_02885 at 659.629 kb on - strand at 659.651 kb on - strand at 659.651 kb on - strand at 659.651 kb on - strand at 659.743 kb on - strand at 659.743 kb on - strand at 659.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x remove 657,777 + PS417_02870 0.81 -1.0 657,778 - PS417_02870 0.81 -0.1 657,778 - PS417_02870 0.81 -0.2 657,795 + PS417_02870 0.82 +1.6 658,133 - -1.7 658,133 - -0.7 658,135 - -0.3 658,191 + -0.1 658,246 + +0.5 658,247 - +1.6 658,517 - PS417_02875 0.65 +0.3 658,664 + -0.9 658,877 - PS417_02880 0.44 +1.3 659,076 - PS417_02880 0.86 +0.3 659,285 + PS417_02885 0.23 -0.9 659,303 - PS417_02885 0.28 +0.0 659,303 - PS417_02885 0.28 +1.6 659,303 - PS417_02885 0.28 -0.2 659,470 - PS417_02885 0.70 -0.7 659,629 - +1.6 659,651 - +2.2 659,651 - -0.2 659,651 - +0.1 659,743 - +1.2 659,743 - +0.9 659,743 - -0.7
Or see this region's nucleotide sequence