Strain Fitness in Pseudomonas simiae WCS417 around PS417_01395

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01390 and PS417_01395 overlap by 23 nucleotidesPS417_01395 and PS417_01400 are separated by 26 nucleotidesPS417_01400 and PS417_01405 are separated by 5 nucleotides PS417_01390: PS417_01390 - PbsX family transcriptional regulator, at 303,391 to 306,204 _01390 PS417_01395: PS417_01395 - biofilm formation protein PelB, at 306,182 to 309,781 _01395 PS417_01400: PS417_01400 - hypothetical protein, at 309,808 to 310,326 _01400 PS417_01405: PS417_01405 - sugar transporter, at 310,332 to 311,699 _01405 Position (kb) 306 307 308 309 310Strain fitness (log2 ratio) -1 0 1 2at 305.504 kb on - strandat 305.504 kb on - strand, within PS417_01390at 305.507 kb on - strand, within PS417_01390at 305.557 kb on + strand, within PS417_01390at 305.558 kb on - strand, within PS417_01390at 305.636 kb on - strand, within PS417_01390at 305.689 kb on + strand, within PS417_01390at 305.690 kb on - strand, within PS417_01390at 305.738 kb on - strand, within PS417_01390at 305.738 kb on - strand, within PS417_01390at 305.762 kb on - strand, within PS417_01390at 305.915 kb on - strand, within PS417_01390at 306.202 kb on + strandat 306.203 kb on - strandat 306.338 kb on + strandat 306.338 kb on + strandat 306.339 kb on - strandat 306.339 kb on - strandat 306.349 kb on - strandat 306.482 kb on + strandat 306.694 kb on + strand, within PS417_01395at 306.707 kb on - strand, within PS417_01395at 306.764 kb on + strand, within PS417_01395at 306.764 kb on + strand, within PS417_01395at 306.765 kb on - strand, within PS417_01395at 306.765 kb on - strand, within PS417_01395at 306.775 kb on + strand, within PS417_01395at 306.775 kb on + strand, within PS417_01395at 306.776 kb on - strand, within PS417_01395at 307.047 kb on + strand, within PS417_01395at 307.047 kb on + strand, within PS417_01395at 307.047 kb on + strand, within PS417_01395at 307.048 kb on - strand, within PS417_01395at 307.048 kb on - strand, within PS417_01395at 307.048 kb on - strand, within PS417_01395at 307.057 kb on + strand, within PS417_01395at 307.347 kb on - strand, within PS417_01395at 307.347 kb on - strand, within PS417_01395at 307.347 kb on - strand, within PS417_01395at 307.396 kb on + strand, within PS417_01395at 307.396 kb on + strand, within PS417_01395at 307.397 kb on - strand, within PS417_01395at 307.397 kb on - strand, within PS417_01395at 307.397 kb on - strand, within PS417_01395at 307.400 kb on + strand, within PS417_01395at 307.494 kb on - strand, within PS417_01395at 307.503 kb on - strand, within PS417_01395at 307.503 kb on - strand, within PS417_01395at 307.683 kb on + strand, within PS417_01395at 307.926 kb on - strand, within PS417_01395at 308.066 kb on + strand, within PS417_01395at 308.067 kb on - strand, within PS417_01395at 308.217 kb on - strand, within PS417_01395at 308.399 kb on + strand, within PS417_01395at 308.605 kb on + strand, within PS417_01395at 308.606 kb on - strand, within PS417_01395at 308.884 kb on + strand, within PS417_01395at 308.921 kb on + strand, within PS417_01395at 308.921 kb on + strand, within PS417_01395at 308.922 kb on - strand, within PS417_01395at 308.923 kb on + strand, within PS417_01395at 308.924 kb on - strand, within PS417_01395at 309.356 kb on + strand, within PS417_01395at 309.357 kb on - strand, within PS417_01395at 309.392 kb on + strand, within PS417_01395at 309.393 kb on - strandat 309.393 kb on - strand, within PS417_01395at 309.393 kb on - strand, within PS417_01395at 309.519 kb on - strandat 309.519 kb on - strandat 309.578 kb on + strandat 309.579 kb on - strandat 309.635 kb on + strandat 309.635 kb on + strandat 309.636 kb on - strandat 309.636 kb on - strandat 309.758 kb on + strandat 309.793 kb on - strandat 309.845 kb on + strandat 309.846 kb on - strandat 309.938 kb on - strand, within PS417_01400at 310.148 kb on - strand, within PS417_01400at 310.403 kb on - strandat 310.599 kb on + strand, within PS417_01405at 310.602 kb on - strandat 310.714 kb on - strand, within PS417_01405

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x
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305,504 - -0.0
305,504 - PS417_01390 0.75 -0.7
305,507 - PS417_01390 0.75 +1.0
305,557 + PS417_01390 0.77 +0.6
305,558 - PS417_01390 0.77 +0.8
305,636 - PS417_01390 0.80 +0.6
305,689 + PS417_01390 0.82 +0.9
305,690 - PS417_01390 0.82 +0.3
305,738 - PS417_01390 0.83 +1.0
305,738 - PS417_01390 0.83 +1.1
305,762 - PS417_01390 0.84 +0.7
305,915 - PS417_01390 0.90 +0.3
306,202 + -0.5
306,203 - +0.1
306,338 + +0.5
306,338 + +0.6
306,339 - -1.2
306,339 - +0.1
306,349 - +0.4
306,482 + +0.3
306,694 + PS417_01395 0.14 +1.6
306,707 - PS417_01395 0.15 -0.8
306,764 + PS417_01395 0.16 +0.2
306,764 + PS417_01395 0.16 +1.0
306,765 - PS417_01395 0.16 +1.2
306,765 - PS417_01395 0.16 -0.7
306,775 + PS417_01395 0.16 -1.4
306,775 + PS417_01395 0.16 -0.2
306,776 - PS417_01395 0.17 -0.3
307,047 + PS417_01395 0.24 +1.1
307,047 + PS417_01395 0.24 +1.2
307,047 + PS417_01395 0.24 +0.0
307,048 - PS417_01395 0.24 -0.1
307,048 - PS417_01395 0.24 +0.6
307,048 - PS417_01395 0.24 +0.2
307,057 + PS417_01395 0.24 +1.2
307,347 - PS417_01395 0.32 +0.5
307,347 - PS417_01395 0.32 +1.5
307,347 - PS417_01395 0.32 +1.3
307,396 + PS417_01395 0.34 +1.7
307,396 + PS417_01395 0.34 +0.5
307,397 - PS417_01395 0.34 +0.5
307,397 - PS417_01395 0.34 -0.1
307,397 - PS417_01395 0.34 +0.6
307,400 + PS417_01395 0.34 +0.5
307,494 - PS417_01395 0.36 +0.4
307,503 - PS417_01395 0.37 +0.4
307,503 - PS417_01395 0.37 +0.6
307,683 + PS417_01395 0.42 -0.6
307,926 - PS417_01395 0.48 +0.7
308,066 + PS417_01395 0.52 +0.8
308,067 - PS417_01395 0.52 +0.1
308,217 - PS417_01395 0.57 +0.6
308,399 + PS417_01395 0.62 +0.6
308,605 + PS417_01395 0.67 +2.3
308,606 - PS417_01395 0.67 +1.1
308,884 + PS417_01395 0.75 +0.0
308,921 + PS417_01395 0.76 +0.4
308,921 + PS417_01395 0.76 -1.3
308,922 - PS417_01395 0.76 +0.6
308,923 + PS417_01395 0.76 -0.7
308,924 - PS417_01395 0.76 +0.5
309,356 + PS417_01395 0.88 +0.5
309,357 - PS417_01395 0.88 +2.0
309,392 + PS417_01395 0.89 +0.2
309,393 - +1.0
309,393 - PS417_01395 0.89 +1.0
309,393 - PS417_01395 0.89 +0.4
309,519 - +1.2
309,519 - +0.8
309,578 + -0.2
309,579 - +0.7
309,635 + +0.6
309,635 + -0.9
309,636 - +0.6
309,636 - +0.8
309,758 + +0.4
309,793 - +0.6
309,845 + +0.4
309,846 - +1.2
309,938 - PS417_01400 0.25 +0.2
310,148 - PS417_01400 0.66 +0.1
310,403 - -0.0
310,599 + PS417_01405 0.20 +0.4
310,602 - -0.0
310,714 - PS417_01405 0.28 +0.3

Or see this region's nucleotide sequence