Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4986 and Psyr_4987 are separated by 6 nucleotides Psyr_4987 and Psyr_4988 are separated by 162 nucleotides Psyr_4988 and Psyr_4989 overlap by 13 nucleotides Psyr_4989 and Psyr_4990 are separated by 246 nucleotides
Psyr_4986: Psyr_4986 - YD repeat protein, at 5,911,246 to 5,915,475
_4986
Psyr_4987: Psyr_4987 - conserved hypothetical protein, at 5,915,482 to 5,916,090
_4987
Psyr_4988: Psyr_4988 - YD repeat protein, at 5,916,253 to 5,917,695
_4988
Psyr_4989: Psyr_4989 - hypothetical protein, at 5,917,683 to 5,918,153
_4989
Psyr_4990: Psyr_4990 - YD repeat protein, at 5,918,400 to 5,921,003
_4990
Position (kb) 5916
5917
5918 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5915.268 kb on + strand at 5915.268 kb on + strand at 5915.269 kb on - strand at 5915.277 kb on + strand at 5915.309 kb on + strand at 5915.310 kb on - strand at 5915.367 kb on - strand at 5915.451 kb on + strand at 5916.093 kb on - strand at 5916.136 kb on + strand at 5916.136 kb on + strand at 5916.137 kb on - strand at 5916.173 kb on + strand at 5916.200 kb on - strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.250 kb on + strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.251 kb on - strand at 5916.267 kb on - strand at 5916.267 kb on - strand at 5916.353 kb on - strand at 5916.435 kb on - strand, within Psyr_4988 at 5916.449 kb on - strand, within Psyr_4988 at 5916.778 kb on + strand, within Psyr_4988 at 5916.858 kb on + strand, within Psyr_4988 at 5917.037 kb on + strand, within Psyr_4988 at 5917.228 kb on + strand, within Psyr_4988 at 5917.272 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.318 kb on + strand, within Psyr_4988 at 5917.319 kb on - strand, within Psyr_4988 at 5917.319 kb on - strand, within Psyr_4988 at 5917.319 kb on - strand, within Psyr_4988 at 5917.319 kb on - strand, within Psyr_4988 at 5917.380 kb on + strand, within Psyr_4988 at 5917.423 kb on + strand, within Psyr_4988 at 5917.424 kb on - strand, within Psyr_4988 at 5917.424 kb on - strand, within Psyr_4988 at 5917.488 kb on - strand, within Psyr_4988 at 5917.516 kb on - strand, within Psyr_4988 at 5917.542 kb on + strand, within Psyr_4988 at 5917.548 kb on + strand, within Psyr_4988 at 5917.548 kb on + strand, within Psyr_4988 at 5917.549 kb on - strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.550 kb on + strand, within Psyr_4988 at 5917.551 kb on - strand at 5917.551 kb on - strand at 5917.551 kb on - strand at 5917.577 kb on + strand at 5917.577 kb on + strand at 5917.577 kb on + strand at 5917.577 kb on + strand at 5917.578 kb on - strand at 5917.578 kb on - strand at 5917.578 kb on - strand at 5917.650 kb on + strand at 5917.651 kb on - strand at 5917.651 kb on - strand at 5917.659 kb on - strand at 5917.659 kb on - strand at 5917.659 kb on - strand at 5917.662 kb on + strand at 5917.663 kb on - strand at 5917.737 kb on + strand, within Psyr_4989 at 5917.738 kb on - strand, within Psyr_4989 at 5917.738 kb on - strand, within Psyr_4989 at 5917.766 kb on + strand, within Psyr_4989 at 5917.766 kb on + strand, within Psyr_4989 at 5917.824 kb on - strand, within Psyr_4989 at 5917.855 kb on + strand, within Psyr_4989 at 5917.900 kb on + strand, within Psyr_4989 at 5917.906 kb on + strand, within Psyr_4989 at 5917.906 kb on + strand, within Psyr_4989 at 5917.985 kb on - strand, within Psyr_4989 at 5918.024 kb on - strand, within Psyr_4989 at 5918.126 kb on - strand at 5918.287 kb on + strand at 5918.287 kb on + strand at 5918.288 kb on - strand at 5918.291 kb on + strand at 5918.359 kb on + strand at 5918.359 kb on + strand at 5918.361 kb on + strand at 5918.362 kb on - strand at 5918.375 kb on + strand at 5918.411 kb on + strand at 5918.412 kb on - strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.487 kb on + strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.488 kb on - strand at 5918.559 kb on + strand at 5918.676 kb on + strand, within Psyr_4990 at 5918.676 kb on + strand, within Psyr_4990
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 5,915,268 + +0.2 5,915,268 + +0.8 5,915,269 - +0.3 5,915,277 + -2.7 5,915,309 + -1.4 5,915,310 - +1.2 5,915,367 - -1.0 5,915,451 + +0.8 5,916,093 - +1.0 5,916,136 + +2.3 5,916,136 + -0.7 5,916,137 - +1.5 5,916,173 + -0.5 5,916,200 - -0.7 5,916,250 + +0.0 5,916,250 + +0.8 5,916,250 + -1.3 5,916,250 + -1.1 5,916,250 + +0.2 5,916,250 + +0.1 5,916,250 + -0.8 5,916,251 - +0.2 5,916,251 - -0.2 5,916,251 - -1.3 5,916,251 - -1.9 5,916,251 - +0.3 5,916,251 - -1.9 5,916,267 - -1.2 5,916,267 - +0.0 5,916,353 - +0.6 5,916,435 - Psyr_4988 0.13 -1.0 5,916,449 - Psyr_4988 0.14 -0.4 5,916,778 + Psyr_4988 0.36 -2.0 5,916,858 + Psyr_4988 0.42 +0.3 5,917,037 + Psyr_4988 0.54 -0.4 5,917,228 + Psyr_4988 0.68 -0.3 5,917,272 + Psyr_4988 0.71 -1.3 5,917,318 + Psyr_4988 0.74 +1.5 5,917,318 + Psyr_4988 0.74 -1.0 5,917,318 + Psyr_4988 0.74 -0.7 5,917,318 + Psyr_4988 0.74 +1.5 5,917,318 + Psyr_4988 0.74 +0.2 5,917,319 - Psyr_4988 0.74 -0.5 5,917,319 - Psyr_4988 0.74 -1.3 5,917,319 - Psyr_4988 0.74 -0.3 5,917,319 - Psyr_4988 0.74 -0.2 5,917,380 + Psyr_4988 0.78 -1.6 5,917,423 + Psyr_4988 0.81 -1.7 5,917,424 - Psyr_4988 0.81 -1.7 5,917,424 - Psyr_4988 0.81 +0.8 5,917,488 - Psyr_4988 0.86 -1.1 5,917,516 - Psyr_4988 0.88 -0.1 5,917,542 + Psyr_4988 0.89 -1.5 5,917,548 + Psyr_4988 0.90 +0.4 5,917,548 + Psyr_4988 0.90 +1.7 5,917,549 - Psyr_4988 0.90 +0.9 5,917,550 + Psyr_4988 0.90 -0.3 5,917,550 + Psyr_4988 0.90 +0.6 5,917,550 + Psyr_4988 0.90 -0.7 5,917,550 + Psyr_4988 0.90 -1.4 5,917,550 + Psyr_4988 0.90 -0.7 5,917,551 - -2.9 5,917,551 - -0.5 5,917,551 - -0.5 5,917,577 + +0.4 5,917,577 + +2.5 5,917,577 + -0.4 5,917,577 + -0.1 5,917,578 - -0.2 5,917,578 - +1.2 5,917,578 - +1.1 5,917,650 + -0.3 5,917,651 - +0.2 5,917,651 - -1.7 5,917,659 - -0.2 5,917,659 - +0.5 5,917,659 - -1.6 5,917,662 + -0.3 5,917,663 - +0.6 5,917,737 + Psyr_4989 0.11 -1.2 5,917,738 - Psyr_4989 0.12 -2.4 5,917,738 - Psyr_4989 0.12 +0.2 5,917,766 + Psyr_4989 0.18 -0.3 5,917,766 + Psyr_4989 0.18 +1.9 5,917,824 - Psyr_4989 0.30 +0.2 5,917,855 + Psyr_4989 0.37 -0.0 5,917,900 + Psyr_4989 0.46 +0.5 5,917,906 + Psyr_4989 0.47 -1.5 5,917,906 + Psyr_4989 0.47 +0.8 5,917,985 - Psyr_4989 0.64 -1.2 5,918,024 - Psyr_4989 0.72 +0.7 5,918,126 - +0.2 5,918,287 + +0.1 5,918,287 + +1.2 5,918,288 - -0.8 5,918,291 + -0.4 5,918,359 + -2.2 5,918,359 + +0.3 5,918,361 + +1.0 5,918,362 - -0.6 5,918,375 + -0.3 5,918,411 + -0.4 5,918,412 - +0.9 5,918,487 + +0.2 5,918,487 + -1.3 5,918,487 + +0.2 5,918,487 + +0.6 5,918,487 + +0.5 5,918,488 - +2.5 5,918,488 - +3.1 5,918,488 - +0.4 5,918,559 + +0.4 5,918,676 + Psyr_4990 0.11 -0.1 5,918,676 + Psyr_4990 0.11 +1.3
Or see this region's nucleotide sequence