Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4687 and Psyr_4688 are separated by 90 nucleotides Psyr_4688 and Psyr_4689 are separated by 138 nucleotides Psyr_4689 and Psyr_4690 are separated by 78 nucleotides
Psyr_4687: Psyr_4687 - biotin synthase, at 5,554,842 to 5,555,900
_4687
Psyr_4688: Psyr_4688 - Phosphoribosyltransferase, at 5,555,991 to 5,556,725
_4688
Psyr_4689: Psyr_4689 - Helix-turn-helix, Fis-type:Molybdenum-binding protein, N-terminal:Molybdenum-pterin binding protein, at 5,556,864 to 5,557,628
_4689
Psyr_4690: Psyr_4690 - Twin-arginine translocation pathway signal, at 5,557,707 to 5,559,626
_4690
Position (kb) 5555
5556
5557 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5555.129 kb on + strand, within Psyr_4687 at 5555.129 kb on + strand, within Psyr_4687 at 5555.129 kb on + strand, within Psyr_4687 at 5555.129 kb on + strand, within Psyr_4687 at 5555.129 kb on + strand, within Psyr_4687 at 5555.129 kb on + strand, within Psyr_4687 at 5555.129 kb on + strand, within Psyr_4687 at 5555.129 kb on + strand, within Psyr_4687 at 5555.130 kb on - strand, within Psyr_4687 at 5555.130 kb on - strand, within Psyr_4687 at 5555.130 kb on - strand, within Psyr_4687 at 5555.130 kb on - strand, within Psyr_4687 at 5555.130 kb on - strand, within Psyr_4687 at 5555.130 kb on - strand, within Psyr_4687 at 5555.130 kb on - strand, within Psyr_4687 at 5555.347 kb on + strand, within Psyr_4687 at 5555.347 kb on + strand, within Psyr_4687 at 5555.347 kb on + strand, within Psyr_4687 at 5555.347 kb on + strand, within Psyr_4687 at 5555.347 kb on + strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.348 kb on - strand, within Psyr_4687 at 5555.374 kb on + strand, within Psyr_4687 at 5555.374 kb on + strand, within Psyr_4687 at 5555.401 kb on + strand, within Psyr_4687 at 5555.434 kb on + strand, within Psyr_4687 at 5555.435 kb on - strand, within Psyr_4687 at 5555.435 kb on - strand, within Psyr_4687 at 5555.435 kb on - strand, within Psyr_4687 at 5555.435 kb on - strand, within Psyr_4687 at 5555.437 kb on + strand, within Psyr_4687 at 5555.438 kb on - strand, within Psyr_4687 at 5555.548 kb on + strand, within Psyr_4687 at 5555.548 kb on + strand, within Psyr_4687 at 5555.548 kb on + strand, within Psyr_4687 at 5555.549 kb on - strand, within Psyr_4687 at 5555.687 kb on - strand, within Psyr_4687 at 5555.687 kb on - strand, within Psyr_4687 at 5555.687 kb on - strand, within Psyr_4687 at 5555.707 kb on + strand, within Psyr_4687 at 5555.707 kb on + strand, within Psyr_4687 at 5555.707 kb on + strand, within Psyr_4687 at 5555.707 kb on + strand, within Psyr_4687 at 5555.708 kb on - strand, within Psyr_4687 at 5555.708 kb on - strand, within Psyr_4687 at 5555.708 kb on - strand, within Psyr_4687 at 5555.708 kb on - strand, within Psyr_4687 at 5555.708 kb on - strand, within Psyr_4687 at 5555.832 kb on + strand at 5555.975 kb on + strand at 5555.975 kb on + strand at 5555.976 kb on - strand at 5555.976 kb on - strand at 5555.976 kb on - strand at 5555.976 kb on - strand at 5555.976 kb on - strand at 5556.025 kb on - strand at 5556.059 kb on - strand at 5556.059 kb on - strand at 5556.059 kb on - strand at 5556.210 kb on - strand, within Psyr_4688 at 5556.235 kb on - strand, within Psyr_4688 at 5556.235 kb on - strand, within Psyr_4688 at 5556.275 kb on + strand, within Psyr_4688 at 5556.275 kb on + strand, within Psyr_4688 at 5556.281 kb on + strand, within Psyr_4688 at 5556.281 kb on + strand, within Psyr_4688 at 5556.281 kb on + strand, within Psyr_4688 at 5556.325 kb on - strand, within Psyr_4688 at 5556.414 kb on + strand, within Psyr_4688 at 5556.415 kb on - strand, within Psyr_4688 at 5556.583 kb on + strand, within Psyr_4688 at 5556.655 kb on + strand at 5556.690 kb on + strand at 5556.690 kb on + strand at 5556.691 kb on - strand at 5556.691 kb on - strand at 5556.691 kb on - strand at 5556.691 kb on - strand at 5556.741 kb on + strand at 5556.742 kb on - strand at 5556.744 kb on + strand at 5556.744 kb on + strand at 5556.744 kb on + strand at 5556.745 kb on - strand at 5556.745 kb on - strand at 5556.745 kb on - strand at 5556.745 kb on - strand at 5556.829 kb on + strand at 5556.830 kb on - strand at 5556.830 kb on - strand at 5556.830 kb on - strand at 5556.880 kb on + strand at 5556.932 kb on + strand at 5556.932 kb on + strand at 5556.932 kb on + strand at 5556.933 kb on - strand at 5556.933 kb on - strand at 5556.984 kb on + strand, within Psyr_4689 at 5556.984 kb on + strand, within Psyr_4689 at 5556.985 kb on - strand, within Psyr_4689 at 5556.985 kb on - strand, within Psyr_4689 at 5556.985 kb on - strand, within Psyr_4689 at 5557.079 kb on + strand, within Psyr_4689 at 5557.079 kb on + strand, within Psyr_4689 at 5557.079 kb on + strand, within Psyr_4689 at 5557.297 kb on + strand, within Psyr_4689 at 5557.297 kb on + strand, within Psyr_4689 at 5557.297 kb on + strand, within Psyr_4689 at 5557.297 kb on + strand, within Psyr_4689 at 5557.297 kb on + strand, within Psyr_4689 at 5557.297 kb on + strand, within Psyr_4689 at 5557.298 kb on - strand, within Psyr_4689 at 5557.298 kb on - strand, within Psyr_4689 at 5557.489 kb on + strand, within Psyr_4689 at 5557.489 kb on + strand, within Psyr_4689 at 5557.489 kb on + strand, within Psyr_4689 at 5557.489 kb on + strand, within Psyr_4689 at 5557.489 kb on + strand, within Psyr_4689 at 5557.489 kb on + strand, within Psyr_4689 at 5557.489 kb on + strand, within Psyr_4689 at 5557.490 kb on - strand, within Psyr_4689 at 5557.490 kb on - strand, within Psyr_4689 at 5557.490 kb on - strand, within Psyr_4689 at 5557.490 kb on - strand, within Psyr_4689 at 5557.490 kb on - strand, within Psyr_4689 at 5557.627 kb on - strand at 5557.627 kb on - strand at 5557.665 kb on + strand at 5557.666 kb on - strand at 5557.666 kb on - strand at 5557.676 kb on + strand at 5557.676 kb on + strand at 5557.717 kb on + strand at 5557.717 kb on + strand at 5557.718 kb on - strand at 5557.718 kb on - strand at 5557.718 kb on - strand at 5557.718 kb on - strand at 5557.720 kb on + strand at 5557.720 kb on + strand at 5557.720 kb on + strand at 5557.721 kb on - strand at 5557.721 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 5,555,129 + Psyr_4687 0.27 -3.2 5,555,129 + Psyr_4687 0.27 -0.9 5,555,129 + Psyr_4687 0.27 -1.8 5,555,129 + Psyr_4687 0.27 +0.4 5,555,129 + Psyr_4687 0.27 -2.2 5,555,129 + Psyr_4687 0.27 +0.4 5,555,129 + Psyr_4687 0.27 -3.9 5,555,129 + Psyr_4687 0.27 -2.8 5,555,130 - Psyr_4687 0.27 -1.4 5,555,130 - Psyr_4687 0.27 -0.8 5,555,130 - Psyr_4687 0.27 -0.6 5,555,130 - Psyr_4687 0.27 -2.7 5,555,130 - Psyr_4687 0.27 -3.4 5,555,130 - Psyr_4687 0.27 -1.3 5,555,130 - Psyr_4687 0.27 -4.4 5,555,347 + Psyr_4687 0.48 -3.0 5,555,347 + Psyr_4687 0.48 -2.2 5,555,347 + Psyr_4687 0.48 -3.3 5,555,347 + Psyr_4687 0.48 -4.0 5,555,347 + Psyr_4687 0.48 -2.9 5,555,348 - Psyr_4687 0.48 -2.9 5,555,348 - Psyr_4687 0.48 -0.7 5,555,348 - Psyr_4687 0.48 -1.1 5,555,348 - Psyr_4687 0.48 -2.2 5,555,348 - Psyr_4687 0.48 -1.2 5,555,348 - Psyr_4687 0.48 -1.8 5,555,348 - Psyr_4687 0.48 -2.9 5,555,348 - Psyr_4687 0.48 -2.8 5,555,374 + Psyr_4687 0.50 -2.1 5,555,374 + Psyr_4687 0.50 -1.9 5,555,401 + Psyr_4687 0.53 -2.1 5,555,434 + Psyr_4687 0.56 -2.7 5,555,435 - Psyr_4687 0.56 +0.4 5,555,435 - Psyr_4687 0.56 +0.7 5,555,435 - Psyr_4687 0.56 -2.6 5,555,435 - Psyr_4687 0.56 -1.6 5,555,437 + Psyr_4687 0.56 -2.2 5,555,438 - Psyr_4687 0.56 -2.4 5,555,548 + Psyr_4687 0.67 -2.1 5,555,548 + Psyr_4687 0.67 -1.8 5,555,548 + Psyr_4687 0.67 -2.4 5,555,549 - Psyr_4687 0.67 -3.7 5,555,687 - Psyr_4687 0.80 -1.6 5,555,687 - Psyr_4687 0.80 -2.4 5,555,687 - Psyr_4687 0.80 -2.5 5,555,707 + Psyr_4687 0.82 -1.6 5,555,707 + Psyr_4687 0.82 -2.0 5,555,707 + Psyr_4687 0.82 -1.7 5,555,707 + Psyr_4687 0.82 -2.4 5,555,708 - Psyr_4687 0.82 -2.4 5,555,708 - Psyr_4687 0.82 -2.2 5,555,708 - Psyr_4687 0.82 -1.2 5,555,708 - Psyr_4687 0.82 -0.2 5,555,708 - Psyr_4687 0.82 -3.3 5,555,832 + -2.6 5,555,975 + -1.9 5,555,975 + -2.5 5,555,976 - +1.2 5,555,976 - -2.2 5,555,976 - -0.2 5,555,976 - +0.9 5,555,976 - +0.1 5,556,025 - -1.8 5,556,059 - -1.4 5,556,059 - -0.8 5,556,059 - -0.9 5,556,210 - Psyr_4688 0.30 +2.0 5,556,235 - Psyr_4688 0.33 -1.0 5,556,235 - Psyr_4688 0.33 -1.1 5,556,275 + Psyr_4688 0.39 +1.1 5,556,275 + Psyr_4688 0.39 +0.1 5,556,281 + Psyr_4688 0.39 +2.1 5,556,281 + Psyr_4688 0.39 +0.7 5,556,281 + Psyr_4688 0.39 -0.4 5,556,325 - Psyr_4688 0.45 -0.5 5,556,414 + Psyr_4688 0.58 -1.4 5,556,415 - Psyr_4688 0.58 +1.4 5,556,583 + Psyr_4688 0.81 -0.1 5,556,655 + -0.5 5,556,690 + -1.0 5,556,690 + -0.5 5,556,691 - +2.4 5,556,691 - +0.8 5,556,691 - -0.7 5,556,691 - -0.6 5,556,741 + -0.3 5,556,742 - -0.7 5,556,744 + +0.2 5,556,744 + -0.2 5,556,744 + +2.0 5,556,745 - -0.1 5,556,745 - +3.0 5,556,745 - +1.4 5,556,745 - +1.5 5,556,829 + -2.0 5,556,830 - -1.8 5,556,830 - +0.5 5,556,830 - -0.3 5,556,880 + +0.0 5,556,932 + -0.1 5,556,932 + +0.4 5,556,932 + +0.7 5,556,933 - -0.9 5,556,933 - -0.0 5,556,984 + Psyr_4689 0.16 -0.3 5,556,984 + Psyr_4689 0.16 +0.1 5,556,985 - Psyr_4689 0.16 -0.6 5,556,985 - Psyr_4689 0.16 -0.9 5,556,985 - Psyr_4689 0.16 -0.2 5,557,079 + Psyr_4689 0.28 -0.7 5,557,079 + Psyr_4689 0.28 +0.5 5,557,079 + Psyr_4689 0.28 -1.4 5,557,297 + Psyr_4689 0.57 +0.5 5,557,297 + Psyr_4689 0.57 -2.5 5,557,297 + Psyr_4689 0.57 -0.6 5,557,297 + Psyr_4689 0.57 -1.3 5,557,297 + Psyr_4689 0.57 -0.9 5,557,297 + Psyr_4689 0.57 -1.9 5,557,298 - Psyr_4689 0.57 +1.1 5,557,298 - Psyr_4689 0.57 -1.1 5,557,489 + Psyr_4689 0.82 -0.1 5,557,489 + Psyr_4689 0.82 -0.3 5,557,489 + Psyr_4689 0.82 +0.6 5,557,489 + Psyr_4689 0.82 -2.5 5,557,489 + Psyr_4689 0.82 +0.1 5,557,489 + Psyr_4689 0.82 -0.8 5,557,489 + Psyr_4689 0.82 -0.4 5,557,490 - Psyr_4689 0.82 +0.6 5,557,490 - Psyr_4689 0.82 -1.9 5,557,490 - Psyr_4689 0.82 +0.1 5,557,490 - Psyr_4689 0.82 +0.7 5,557,490 - Psyr_4689 0.82 -0.3 5,557,627 - -0.5 5,557,627 - +0.3 5,557,665 + -0.4 5,557,666 - -0.8 5,557,666 - -1.1 5,557,676 + +2.4 5,557,676 + -0.2 5,557,717 + +0.0 5,557,717 + -0.9 5,557,718 - -0.3 5,557,718 - -1.1 5,557,718 - -3.4 5,557,718 - +0.8 5,557,720 + -1.4 5,557,720 + +0.8 5,557,720 + +0.3 5,557,721 - +0.2 5,557,721 - +0.9
Or see this region's nucleotide sequence