Experiment: KB with Lupeol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4279 and Psyr_4280 are separated by 91 nucleotides Psyr_4280 and Psyr_4281 are separated by 21 nucleotides
Psyr_4279: Psyr_4279 - 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase, at 5,103,190 to 5,104,314
_4279
Psyr_4280: Psyr_4280 - conserved hypothetical protein, at 5,104,406 to 5,104,573
_4280
Psyr_4281: Psyr_4281 - cytochrome bd quinol oxidase subunit 2 apoprotein, at 5,104,595 to 5,105,602
_4281
Position (kb) 5104
5105 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5103.466 kb on + strand, within Psyr_4279 at 5103.466 kb on + strand, within Psyr_4279 at 5103.467 kb on - strand, within Psyr_4279 at 5103.467 kb on - strand, within Psyr_4279 at 5103.573 kb on - strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.667 kb on + strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.668 kb on - strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.671 kb on + strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.672 kb on - strand, within Psyr_4279 at 5103.961 kb on + strand, within Psyr_4279 at 5103.962 kb on - strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.201 kb on + strand, within Psyr_4279 at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.202 kb on - strand at 5104.312 kb on + strand at 5104.313 kb on - strand at 5104.313 kb on - strand at 5104.476 kb on - strand, within Psyr_4280 at 5104.476 kb on - strand, within Psyr_4280 at 5104.597 kb on - strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.638 kb on + strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.639 kb on - strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.641 kb on + strand at 5104.642 kb on - strand at 5104.642 kb on - strand at 5104.642 kb on - strand at 5104.642 kb on - strand at 5104.642 kb on - strand at 5104.821 kb on - strand, within Psyr_4281 at 5104.834 kb on - strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.869 kb on + strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5104.870 kb on - strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.193 kb on + strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.194 kb on - strand, within Psyr_4281 at 5105.352 kb on + strand, within Psyr_4281 at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.544 kb on + strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand at 5105.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Lupeol 10 mM remove 5,103,466 + Psyr_4279 0.25 +1.3 5,103,466 + Psyr_4279 0.25 -1.5 5,103,467 - Psyr_4279 0.25 -0.0 5,103,467 - Psyr_4279 0.25 -0.6 5,103,573 - Psyr_4279 0.34 -0.3 5,103,667 + Psyr_4279 0.42 -0.0 5,103,667 + Psyr_4279 0.42 +0.9 5,103,667 + Psyr_4279 0.42 -0.3 5,103,667 + Psyr_4279 0.42 -1.1 5,103,667 + Psyr_4279 0.42 -0.1 5,103,667 + Psyr_4279 0.42 -0.8 5,103,667 + Psyr_4279 0.42 -1.3 5,103,667 + Psyr_4279 0.42 -0.2 5,103,667 + Psyr_4279 0.42 -0.3 5,103,667 + Psyr_4279 0.42 -0.2 5,103,667 + Psyr_4279 0.42 +0.8 5,103,667 + Psyr_4279 0.42 +0.1 5,103,667 + Psyr_4279 0.42 -0.1 5,103,668 - Psyr_4279 0.42 -0.4 5,103,668 - Psyr_4279 0.42 +1.7 5,103,668 - Psyr_4279 0.42 -0.4 5,103,668 - Psyr_4279 0.42 +4.1 5,103,668 - Psyr_4279 0.42 +0.9 5,103,668 - Psyr_4279 0.42 -1.0 5,103,668 - Psyr_4279 0.42 -0.3 5,103,668 - Psyr_4279 0.42 -0.0 5,103,668 - Psyr_4279 0.42 +0.3 5,103,668 - Psyr_4279 0.42 +0.6 5,103,668 - Psyr_4279 0.42 +0.1 5,103,668 - Psyr_4279 0.42 -0.8 5,103,668 - Psyr_4279 0.42 +0.4 5,103,668 - Psyr_4279 0.42 -0.4 5,103,668 - Psyr_4279 0.42 +0.6 5,103,668 - Psyr_4279 0.42 +0.1 5,103,668 - Psyr_4279 0.42 +2.7 5,103,668 - Psyr_4279 0.42 -0.9 5,103,668 - Psyr_4279 0.42 -0.8 5,103,668 - Psyr_4279 0.42 -0.1 5,103,671 + Psyr_4279 0.43 +1.9 5,103,671 + Psyr_4279 0.43 -0.2 5,103,671 + Psyr_4279 0.43 -0.3 5,103,672 - Psyr_4279 0.43 +1.3 5,103,672 - Psyr_4279 0.43 +1.9 5,103,672 - Psyr_4279 0.43 -0.6 5,103,672 - Psyr_4279 0.43 -0.3 5,103,672 - Psyr_4279 0.43 +0.5 5,103,961 + Psyr_4279 0.69 +0.2 5,103,962 - Psyr_4279 0.69 -1.5 5,104,201 + Psyr_4279 0.90 +0.5 5,104,201 + Psyr_4279 0.90 +1.4 5,104,201 + Psyr_4279 0.90 -0.2 5,104,201 + Psyr_4279 0.90 +0.3 5,104,201 + Psyr_4279 0.90 +0.3 5,104,202 - +0.4 5,104,202 - -1.6 5,104,202 - -0.6 5,104,202 - -1.2 5,104,202 - +0.9 5,104,202 - -0.8 5,104,202 - +0.4 5,104,202 - +3.3 5,104,312 + -0.6 5,104,313 - +1.7 5,104,313 - -1.2 5,104,476 - Psyr_4280 0.42 -0.7 5,104,476 - Psyr_4280 0.42 -1.6 5,104,597 - +0.1 5,104,638 + +0.3 5,104,638 + +0.3 5,104,638 + -0.3 5,104,638 + +0.2 5,104,638 + +2.3 5,104,638 + -1.5 5,104,638 + +1.2 5,104,639 - +0.3 5,104,639 - +0.6 5,104,639 - -0.2 5,104,639 - +0.6 5,104,639 - +1.1 5,104,639 - +0.5 5,104,639 - +0.2 5,104,639 - +1.2 5,104,639 - +0.1 5,104,641 + +0.2 5,104,641 + +1.3 5,104,641 + -0.1 5,104,641 + -2.5 5,104,641 + +0.0 5,104,642 - +0.0 5,104,642 - +1.3 5,104,642 - -3.8 5,104,642 - +3.7 5,104,642 - +4.1 5,104,821 - Psyr_4281 0.22 -0.4 5,104,834 - Psyr_4281 0.24 +1.2 5,104,869 + Psyr_4281 0.27 +0.1 5,104,869 + Psyr_4281 0.27 +0.7 5,104,869 + Psyr_4281 0.27 -0.6 5,104,869 + Psyr_4281 0.27 -0.8 5,104,869 + Psyr_4281 0.27 +0.7 5,104,869 + Psyr_4281 0.27 -1.4 5,104,869 + Psyr_4281 0.27 -1.5 5,104,869 + Psyr_4281 0.27 +0.7 5,104,869 + Psyr_4281 0.27 -1.5 5,104,869 + Psyr_4281 0.27 -0.4 5,104,869 + Psyr_4281 0.27 +1.7 5,104,870 - Psyr_4281 0.27 +0.5 5,104,870 - Psyr_4281 0.27 -0.2 5,104,870 - Psyr_4281 0.27 +0.5 5,104,870 - Psyr_4281 0.27 +0.4 5,104,870 - Psyr_4281 0.27 +0.6 5,104,870 - Psyr_4281 0.27 -0.0 5,104,870 - Psyr_4281 0.27 +1.1 5,104,870 - Psyr_4281 0.27 -1.0 5,104,870 - Psyr_4281 0.27 +0.4 5,104,870 - Psyr_4281 0.27 -0.1 5,105,193 + Psyr_4281 0.59 -1.8 5,105,193 + Psyr_4281 0.59 -1.1 5,105,193 + Psyr_4281 0.59 -0.8 5,105,193 + Psyr_4281 0.59 -0.3 5,105,193 + Psyr_4281 0.59 +0.2 5,105,193 + Psyr_4281 0.59 -0.6 5,105,193 + Psyr_4281 0.59 +0.5 5,105,193 + Psyr_4281 0.59 +0.7 5,105,193 + Psyr_4281 0.59 -0.3 5,105,193 + Psyr_4281 0.59 -0.4 5,105,194 - Psyr_4281 0.59 +1.1 5,105,194 - Psyr_4281 0.59 +0.5 5,105,194 - Psyr_4281 0.59 +1.5 5,105,194 - Psyr_4281 0.59 +0.5 5,105,194 - Psyr_4281 0.59 +1.7 5,105,194 - Psyr_4281 0.59 -0.0 5,105,194 - Psyr_4281 0.59 +0.0 5,105,194 - Psyr_4281 0.59 -1.8 5,105,194 - Psyr_4281 0.59 -1.3 5,105,194 - Psyr_4281 0.59 -1.2 5,105,352 + Psyr_4281 0.75 -0.2 5,105,544 + +1.3 5,105,544 + -1.3 5,105,544 + -1.6 5,105,544 + +1.1 5,105,544 + -1.4 5,105,544 + -0.3 5,105,544 + +1.3 5,105,544 + -1.3 5,105,544 + -0.2 5,105,544 + +0.8 5,105,544 + +1.2 5,105,544 + +0.5 5,105,545 - +0.2 5,105,545 - -0.3 5,105,545 - -0.3 5,105,545 - +0.0 5,105,545 - -0.4 5,105,545 - +2.3 5,105,545 - +1.3 5,105,545 - -0.3 5,105,545 - +0.2 5,105,545 - +1.3 5,105,545 - +0.6
Or see this region's nucleotide sequence