Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3408

Experiment: KB with Lupeol 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Lupeol 10 mM
4,068,022	+				-1.1
4,068,029	-				+0.1
4,068,094	+				+4.0
4,068,095	-				+1.2
4,068,126	-				-0.9
4,068,126	-				+1.3
4,068,137	-				-0.2
4,068,177	+				-0.1
4,068,182	-				-0.6
4,068,301	+				+0.2
4,068,301	+				+0.4
4,068,301	+				-0.2
4,068,301	+				-0.6
4,068,301	+				-0.4
4,068,301	+				-0.9
4,068,301	+				-0.5
4,068,301	+				-0.6
4,068,301	+				-1.3
4,068,348	+				-1.0
4,068,348	+				-1.8
4,068,370	+				-0.1
4,068,380	+				+0.6
4,068,722	-		Psyr_3407	0.66	-1.3
4,068,734	+		Psyr_3407	0.68	-0.0
4,068,735	-		Psyr_3407	0.68	+1.1
4,068,756	+		Psyr_3407	0.72	+2.8
4,068,756	+		Psyr_3407	0.72	-1.5
4,068,756	+		Psyr_3407	0.72	-1.8
4,068,757	-		Psyr_3407	0.72	-0.1
4,068,757	-		Psyr_3407	0.72	-1.2
4,068,784	-		Psyr_3407	0.77	-0.4
4,068,784	-		Psyr_3407	0.77	-1.0
4,068,784	-		Psyr_3407	0.77	-1.3
4,068,786	+		Psyr_3407	0.77	-0.1
4,068,796	-		Psyr_3407	0.79	-0.7
4,068,849	+		Psyr_3407	0.89	+0.3
4,068,896	+				-1.9
4,068,907	-				+2.8
4,069,036	+				-0.8
4,069,036	+				+0.5
4,069,037	-				-1.0
4,069,037	-				+0.2
4,069,037	-				-1.0
4,069,037	-				-2.0
4,069,037	-				-0.1
4,069,191	+		Psyr_3408	0.10	-0.8
4,069,191	+		Psyr_3408	0.10	-0.4
4,069,191	+		Psyr_3408	0.10	+0.4
4,069,191	+		Psyr_3408	0.10	-0.9
4,069,191	+		Psyr_3408	0.10	-0.6
4,069,191	+		Psyr_3408	0.10	+0.1
4,069,191	+		Psyr_3408	0.10	-0.9
4,069,191	+		Psyr_3408	0.10	+1.6
4,069,192	-		Psyr_3408	0.10	+0.1
4,069,192	-		Psyr_3408	0.10	-0.8
4,069,192	-		Psyr_3408	0.10	+0.2
4,069,192	-		Psyr_3408	0.10	+1.8
4,069,192	-		Psyr_3408	0.10	-0.7
4,069,192	-		Psyr_3408	0.10	+0.5
4,069,192	-		Psyr_3408	0.10	+0.1
4,069,192	-		Psyr_3408	0.10	-2.3
4,069,192	-		Psyr_3408	0.10	-0.4
4,069,192	-		Psyr_3408	0.10	+3.8
4,069,192	-		Psyr_3408	0.10	-0.1
4,069,192	-		Psyr_3408	0.10	-0.4
4,069,192	-		Psyr_3408	0.10	+0.6
4,069,192	-		Psyr_3408	0.10	+0.5
4,069,195	+		Psyr_3408	0.10	+0.5
4,069,195	+		Psyr_3408	0.10	-1.9
4,069,195	+		Psyr_3408	0.10	+0.3
4,069,195	+		Psyr_3408	0.10	-0.5
4,069,195	+		Psyr_3408	0.10	-0.0
4,069,195	+		Psyr_3408	0.10	+0.0
4,069,196	-		Psyr_3408	0.11	-0.4
4,069,196	-		Psyr_3408	0.11	-0.5
4,069,196	-		Psyr_3408	0.11	-1.2
4,069,196	-		Psyr_3408	0.11	+1.6
4,069,196	-		Psyr_3408	0.11	+1.5
4,069,206	+		Psyr_3408	0.11	-0.6
4,069,207	-		Psyr_3408	0.11	+0.3
4,069,366	+		Psyr_3408	0.18	+0.3
4,069,429	+		Psyr_3408	0.21	-0.4
4,069,429	+		Psyr_3408	0.21	-0.1
4,069,429	+		Psyr_3408	0.21	-0.7
4,069,429	+		Psyr_3408	0.21	+0.1
4,069,429	+		Psyr_3408	0.21	-0.3
4,069,429	+		Psyr_3408	0.21	+0.5
4,069,429	+		Psyr_3408	0.21	-1.0
4,069,430	-		Psyr_3408	0.22	-1.3
4,069,430	-		Psyr_3408	0.22	-0.9
4,069,513	+		Psyr_3408	0.25	-0.8
4,069,513	+		Psyr_3408	0.25	+0.5
4,069,513	+		Psyr_3408	0.25	-1.0
4,069,514	-		Psyr_3408	0.25	-0.5
4,069,514	-		Psyr_3408	0.25	-0.3
4,069,514	-		Psyr_3408	0.25	-1.1
4,069,514	-		Psyr_3408	0.25	-0.5
4,069,514	-		Psyr_3408	0.25	+0.0
4,069,514	-		Psyr_3408	0.25	+0.7
4,069,555	+		Psyr_3408	0.27	+0.7
4,069,555	+		Psyr_3408	0.27	-1.7
4,069,556	-		Psyr_3408	0.27	-0.5
4,069,556	-		Psyr_3408	0.27	-0.8
4,069,559	-		Psyr_3408	0.28	-0.9
4,069,559	-		Psyr_3408	0.28	+0.2
4,069,559	-		Psyr_3408	0.28	-1.0
4,069,559	-		Psyr_3408	0.28	-0.7
4,069,559	-		Psyr_3408	0.28	-0.4
4,069,559	-		Psyr_3408	0.28	-0.6
4,069,559	-		Psyr_3408	0.28	+0.3
4,069,572	-		Psyr_3408	0.28	+1.0
4,069,613	-		Psyr_3408	0.30	-0.2
4,069,613	-		Psyr_3408	0.30	-2.3
4,069,744	+		Psyr_3408	0.36	-2.5
4,069,808	+		Psyr_3408	0.39	+1.2
4,069,809	-		Psyr_3408	0.39	-1.0
4,069,934	-		Psyr_3408	0.45	+0.2
4,069,934	-		Psyr_3408	0.45	-2.4
4,069,934	-		Psyr_3408	0.45	+0.5
4,069,939	+		Psyr_3408	0.45	+0.8
4,070,177	+		Psyr_3408	0.57	+0.1
4,070,493	+		Psyr_3408	0.71	+0.9
4,070,493	+		Psyr_3408	0.71	+2.8
4,070,493	+		Psyr_3408	0.71	-0.6
4,070,494	-		Psyr_3408	0.71	-0.8
4,070,494	-		Psyr_3408	0.71	-0.3
4,070,495	+		Psyr_3408	0.72	-1.4
4,070,495	+		Psyr_3408	0.72	-0.9
4,070,495	+		Psyr_3408	0.72	-1.1
4,070,496	-		Psyr_3408	0.72	-1.1
4,070,496	-		Psyr_3408	0.72	+1.8
4,070,496	-		Psyr_3408	0.72	-0.1
4,070,572	+		Psyr_3408	0.75	-0.4
4,070,573	-		Psyr_3408	0.75	-1.1
4,070,573	-		Psyr_3408	0.75	-0.3
4,070,643	+		Psyr_3408	0.78	-1.0
4,070,643	+		Psyr_3408	0.78	-1.1
4,070,643	+		Psyr_3408	0.78	+1.2
4,070,643	+		Psyr_3408	0.78	-0.4
4,070,643	+		Psyr_3408	0.78	+0.8
4,070,643	+		Psyr_3408	0.78	-0.6
4,070,644	-		Psyr_3408	0.78	-0.0
4,070,644	-		Psyr_3408	0.78	-0.6
4,070,644	-		Psyr_3408	0.78	-1.0
4,070,648	-		Psyr_3408	0.79	-0.1
4,070,648	-		Psyr_3408	0.79	-1.4
4,070,648	-		Psyr_3408	0.79	-0.5
4,070,648	-		Psyr_3408	0.79	-0.5
4,070,709	-		Psyr_3408	0.82	+1.1
4,070,741	+		Psyr_3408	0.83	+1.3
4,070,742	-		Psyr_3408	0.83	-0.1
4,070,858	+		Psyr_3408	0.89	-0.5
4,070,882	+		Psyr_3408	0.90	-0.8
4,070,972	+				+0.1
4,070,973	-				-0.7
4,071,019	-				+0.4
4,071,019	-				+0.5
4,071,025	+				-0.5
4,071,025	+				+1.1
4,071,025	+				-0.8
4,071,026	-				-1.4
4,071,026	-				-1.0
4,071,026	-				+0.2
4,071,026	-				+0.5
4,071,030	-				-1.8
4,071,055	+				+0.3
4,071,055	+				-2.3
4,071,056	-				-0.5
4,071,056	-				-0.4
4,071,056	-				-2.8
4,071,056	-				-0.6
4,071,056	-				-1.3
4,071,215	-				+1.8
4,071,504	+				+0.6
4,071,505	-				-1.5
4,071,574	+				+1.2
4,071,574	+				-0.6
4,071,614	+				-1.1
4,071,614	+				+0.5
4,071,615	-				+0.4
4,071,617	-				-0.4
4,071,617	-				-1.8
4,071,764	-		Psyr_3409	0.13	-0.8
4,071,766	+		Psyr_3409	0.13	-1.2
4,071,766	+		Psyr_3409	0.13	-0.8
4,071,767	-		Psyr_3409	0.14	+0.6
4,071,826	-		Psyr_3409	0.17	-1.7
4,071,921	+		Psyr_3409	0.22	-1.7
4,071,921	+		Psyr_3409	0.22	+1.1
4,071,921	+		Psyr_3409	0.22	+2.8
4,071,922	-		Psyr_3409	0.22	+1.2
4,071,922	-		Psyr_3409	0.22	-0.6
4,071,924	-		Psyr_3409	0.22	+0.2
4,071,988	+		Psyr_3409	0.26	-1.3
4,072,047	+		Psyr_3409	0.29	+1.4