Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1886

Experiment: KB with Lupeol 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Lupeol 10 mM
2,155,141	+				+0.0
2,155,142	-				+3.9
2,155,210	+				+0.7
2,155,250	+				-0.7
2,155,251	-				-0.6
2,155,251	-				-1.4
2,155,251	-				-0.1
2,155,258	+				+2.7
2,155,267	-				+0.8
2,155,308	+				-1.3
2,155,308	+				-0.3
2,155,308	+				-0.0
2,155,308	+				-0.9
2,155,309	-				-1.6
2,155,309	-				-0.6
2,155,309	-				+0.9
2,155,337	+				+1.9
2,155,338	-				-0.1
2,155,375	+				+0.9
2,155,427	-				-0.4
2,155,436	-				+2.3
2,155,437	+				-0.8
2,155,437	+				-1.6
2,155,437	+				+0.1
2,155,437	+				+2.1
2,155,437	+				+3.6
2,155,438	-				+0.5
2,155,438	-				+0.2
2,155,438	-				+0.5
2,155,438	-				-0.6
2,155,438	-				-0.8
2,155,438	-				-0.5
2,155,438	-				-0.2
2,155,438	-				+0.9
2,155,438	-				-0.4
2,155,511	+				+0.4
2,155,511	+				+0.2
2,155,529	+				-0.2
2,155,529	+				-0.0
2,155,529	+				-1.3
2,155,529	+				+0.2
2,155,529	+				+0.2
2,155,529	+				-0.3
2,155,529	+				-0.4
2,155,529	+				-0.5
2,155,529	+				+3.6
2,155,530	-				+0.5
2,155,534	-				+2.6
2,155,559	+		Psyr_1884	0.11	-1.5
2,155,559	+		Psyr_1884	0.11	+0.7
2,155,559	+		Psyr_1884	0.11	-0.9
2,155,560	-		Psyr_1884	0.12	-2.3
2,155,560	-		Psyr_1884	0.12	-1.7
2,155,592	-		Psyr_1884	0.29	-3.1
2,155,696	+		Psyr_1884	0.87	-0.4
2,155,696	+		Psyr_1884	0.87	-0.6
2,155,696	+		Psyr_1884	0.87	-1.5
2,155,696	+		Psyr_1884	0.87	-0.5
2,155,696	+		Psyr_1884	0.87	+1.3
2,155,696	+		Psyr_1884	0.87	+1.9
2,155,697	-		Psyr_1884	0.88	+1.1
2,155,697	-		Psyr_1884	0.88	-0.7
2,155,697	-		Psyr_1884	0.88	+1.6
2,155,697	-		Psyr_1884	0.88	+1.6
2,155,697	-		Psyr_1884	0.88	-0.3
2,155,697	-		Psyr_1884	0.88	+0.6
2,155,749	-				+1.1
2,155,749	-				+2.3
2,155,774	-				+0.7
2,155,774	-				-2.0
2,155,805	-				-0.2
2,155,879	+		Psyr_1885	0.53	+0.1
2,155,912	+		Psyr_1885	0.74	-0.9
2,155,912	+		Psyr_1885	0.74	+2.0
2,155,912	+		Psyr_1885	0.74	+3.9
2,155,980	+				+1.3
2,155,980	+				-0.7
2,155,980	+				+0.5
2,155,981	-				-0.1
2,155,981	-				-1.2
2,155,981	-				+1.0
2,155,981	-				-0.2
2,155,990	+				+0.7
2,155,990	+				+2.3
2,156,079	+				+1.5
2,156,079	+				-0.1
2,156,079	+				-0.4
2,156,079	+				-0.7
2,156,080	-				-1.5
2,156,097	-				-0.3
2,156,120	+				+2.5
2,156,120	+				-1.0
2,156,120	+				-2.0
2,156,120	+				+0.4
2,156,120	+				+0.2
2,156,133	+				+0.5
2,156,164	+				+0.7
2,156,164	+				-0.2
2,156,165	-				+1.1
2,156,165	-				+0.1
2,156,165	-				-1.5
2,156,172	+				+0.0
2,156,203	+				-0.2
2,156,204	-				-1.3
2,156,256	+		Psyr_1886	0.12	-2.0
2,156,256	+		Psyr_1886	0.12	-0.7
2,156,256	+		Psyr_1886	0.12	-0.1
2,156,257	-		Psyr_1886	0.12	-0.4
2,156,257	-		Psyr_1886	0.12	-2.0
2,156,257	-		Psyr_1886	0.12	-0.5
2,156,257	-		Psyr_1886	0.12	-0.1
2,156,257	-		Psyr_1886	0.12	+0.1
2,156,257	-		Psyr_1886	0.12	-0.4
2,156,291	+		Psyr_1886	0.14	+0.3
2,156,296	-		Psyr_1886	0.14	+0.9
2,156,362	+		Psyr_1886	0.19	-0.4
2,156,363	-		Psyr_1886	0.19	+0.6
2,156,413	+		Psyr_1886	0.22	-2.5
2,156,414	-		Psyr_1886	0.22	-0.2
2,156,421	-		Psyr_1886	0.23	-0.5
2,156,421	-		Psyr_1886	0.23	+1.3
2,156,484	-		Psyr_1886	0.27	+3.7
2,156,488	+		Psyr_1886	0.27	+0.4
2,156,489	-		Psyr_1886	0.27	-0.7
2,156,489	-		Psyr_1886	0.27	-0.1
2,156,489	-		Psyr_1886	0.27	-1.0
2,156,489	-		Psyr_1886	0.27	+0.7
2,156,489	-		Psyr_1886	0.27	-0.4
2,156,489	-		Psyr_1886	0.27	+3.6
2,156,512	+		Psyr_1886	0.29	-0.5
2,156,512	+		Psyr_1886	0.29	+0.3
2,156,512	+		Psyr_1886	0.29	-2.2
2,156,512	+		Psyr_1886	0.29	-0.9
2,156,513	-		Psyr_1886	0.29	+1.0
2,156,545	-		Psyr_1886	0.31	+1.6
2,156,559	-		Psyr_1886	0.32	-0.3
2,156,575	+		Psyr_1886	0.33	+0.0
2,156,588	+		Psyr_1886	0.34	-0.4
2,156,588	+		Psyr_1886	0.34	+0.4
2,156,588	+		Psyr_1886	0.34	-0.3
2,156,589	-		Psyr_1886	0.34	+0.7
2,156,589	-		Psyr_1886	0.34	-1.2
2,156,589	-		Psyr_1886	0.34	-0.6
2,156,607	-		Psyr_1886	0.35	+0.7
2,156,644	+		Psyr_1886	0.38	+0.3
2,156,644	+		Psyr_1886	0.38	+0.0
2,156,645	-		Psyr_1886	0.38	-0.5
2,156,646	+		Psyr_1886	0.38	-0.2
2,156,666	-		Psyr_1886	0.39	-1.0
2,156,666	-		Psyr_1886	0.39	+0.4
2,156,695	-		Psyr_1886	0.41	-0.6
2,156,701	+		Psyr_1886	0.42	+1.3
2,156,702	-		Psyr_1886	0.42	+2.9
2,156,702	-		Psyr_1886	0.42	-0.5
2,156,723	+		Psyr_1886	0.43	-0.7
2,156,724	-		Psyr_1886	0.43	+2.9
2,156,724	-		Psyr_1886	0.43	+0.7
2,156,876	+		Psyr_1886	0.53	-1.0
2,156,876	+		Psyr_1886	0.53	-1.4
2,156,876	+		Psyr_1886	0.53	+0.8
2,156,876	+		Psyr_1886	0.53	+1.5
2,156,876	+		Psyr_1886	0.53	+0.7
2,156,876	+		Psyr_1886	0.53	-1.3
2,156,876	+		Psyr_1886	0.53	+0.6
2,156,876	+		Psyr_1886	0.53	-0.6
2,156,877	-		Psyr_1886	0.53	-0.4
2,156,877	-		Psyr_1886	0.53	-0.4
2,156,877	-		Psyr_1886	0.53	-1.4
2,156,877	-		Psyr_1886	0.53	+0.1
2,156,877	-		Psyr_1886	0.53	-0.5
2,156,939	-		Psyr_1886	0.58	-0.7
2,156,939	-		Psyr_1886	0.58	-2.3
2,156,939	-		Psyr_1886	0.58	-0.3
2,156,944	+		Psyr_1886	0.58	-0.9
2,156,944	+		Psyr_1886	0.58	-0.0
2,156,945	-		Psyr_1886	0.58	-0.7
2,156,965	-		Psyr_1886	0.59	+0.0
2,157,016	+		Psyr_1886	0.63	-0.7
2,157,016	+		Psyr_1886	0.63	+1.1
2,157,016	+		Psyr_1886	0.63	+0.4
2,157,016	+		Psyr_1886	0.63	-0.4
2,157,016	+		Psyr_1886	0.63	+0.6
2,157,016	+		Psyr_1886	0.63	+0.1
2,157,017	-		Psyr_1886	0.63	-0.2
2,157,017	-		Psyr_1886	0.63	+1.5
2,157,017	-		Psyr_1886	0.63	-0.9
2,157,017	-		Psyr_1886	0.63	+0.7
2,157,017	-		Psyr_1886	0.63	-0.4
2,157,017	-		Psyr_1886	0.63	-1.0
2,157,017	-		Psyr_1886	0.63	+1.3
2,157,017	-		Psyr_1886	0.63	+0.0
2,157,017	-		Psyr_1886	0.63	-0.7
2,157,072	+		Psyr_1886	0.66	+0.1
2,157,072	+		Psyr_1886	0.66	-0.7
2,157,073	-		Psyr_1886	0.67	+0.8
2,157,215	+		Psyr_1886	0.76	+1.9
2,157,216	-		Psyr_1886	0.76	-0.5
2,157,216	-		Psyr_1886	0.76	+1.3
2,157,219	+		Psyr_1886	0.76	-0.0
2,157,219	+		Psyr_1886	0.76	-0.7
2,157,219	+		Psyr_1886	0.76	+2.9
2,157,219	+		Psyr_1886	0.76	+1.3
2,157,220	-		Psyr_1886	0.76	-1.2
2,157,220	-		Psyr_1886	0.76	-1.1
2,157,220	-		Psyr_1886	0.76	-0.2
2,157,287	+		Psyr_1886	0.81	+0.9
2,157,287	+		Psyr_1886	0.81	-1.2
2,157,287	+		Psyr_1886	0.81	+1.0
2,157,368	-		Psyr_1886	0.86	-0.5
2,157,368	-		Psyr_1886	0.86	-0.2
2,157,391	+		Psyr_1886	0.88	-0.4
2,157,391	+		Psyr_1886	0.88	+2.9
2,157,391	+		Psyr_1886	0.88	-1.4
2,157,391	+		Psyr_1886	0.88	+0.6
2,157,392	-		Psyr_1886	0.88	-0.7
2,157,392	-		Psyr_1886	0.88	-0.5
2,157,392	-		Psyr_1886	0.88	-0.3
2,157,392	-		Psyr_1886	0.88	-0.0
2,157,392	-		Psyr_1886	0.88	+0.4
2,157,392	-		Psyr_1886	0.88	-2.0
2,157,459	+				+0.9
2,157,459	+				-0.5
2,157,520	-				-1.7
2,157,568	+				+0.1
2,157,576	+				-1.2
2,157,576	+				-0.9
2,157,605	+				-0.6
2,157,652	+				+0.8
2,157,745	+				-0.0
2,157,745	+				-1.1
2,157,746	-				-0.0
2,157,769	+				+0.7
2,157,775	+				+0.4
2,157,791	-				+1.3
2,157,797	+				+1.2
2,157,800	+				+1.1
2,157,809	+				-1.0
2,157,810	-				-0.0
2,157,810	-				-0.6
2,157,810	-				+2.4
2,157,810	-				-1.6
2,157,811	+				-0.2
2,157,811	+				+0.6
2,157,811	+				-3.1
2,157,811	+				-0.1
2,157,811	+				+0.9
2,157,811	+				-0.4
2,157,812	-				+3.0
2,157,812	-				+0.2
2,157,812	-				-1.0
2,157,813	+				-0.5
2,157,813	+				-0.9
2,157,841	+		Psyr_1887	0.12	+0.1
2,157,841	+		Psyr_1887	0.12	-1.3
2,157,842	-		Psyr_1887	0.13	-0.0
2,157,842	-		Psyr_1887	0.13	+0.0
2,157,930	+		Psyr_1887	0.87	-0.9
2,157,930	+		Psyr_1887	0.87	-0.3
2,157,934	+				-0.6
2,157,934	+				-0.7
2,157,934	+				+0.3
2,157,934	+				-0.0
2,157,935	-				-0.1
2,157,935	-				+0.5
2,157,947	-				-1.0
2,157,951	+				+0.1
2,157,951	+				-0.6
2,157,952	-				+0.3
2,158,013	+				+4.9
2,158,014	-				-0.6
2,158,026	+				-1.6
2,158,026	+				-0.1
2,158,027	-				+3.3
2,158,027	-				-0.3
2,158,138	+				-0.2
2,158,139	-				+0.6
2,158,139	-				-1.0
2,158,197	-		Psyr_1888	0.11	+2.9
2,158,197	-		Psyr_1888	0.11	-0.3
2,158,288	+		Psyr_1888	0.23	-0.6
2,158,289	-		Psyr_1888	0.23	+1.3
2,158,294	+		Psyr_1888	0.24	+0.1
2,158,397	+		Psyr_1888	0.37	+0.5
2,158,492	-		Psyr_1888	0.50	+1.3
2,158,507	+		Psyr_1888	0.52	+4.3
2,158,508	-		Psyr_1888	0.52	-0.8