Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24160 and PS417_24165 are separated by 642 nucleotides PS417_24165 and PS417_24170 overlap by 11 nucleotides
PS417_24160: PS417_24160 - hypothetical protein, at 5,234,622 to 5,235,464
_24160
PS417_24165: PS417_24165 - hypothetical protein, at 5,236,107 to 5,236,799
_24165
PS417_24170: PS417_24170 - cell division protein FtsK, at 5,236,789 to 5,242,218
_24170
Position (kb) 5236
5237 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5235.728 kb on + strand at 5235.974 kb on + strand at 5236.282 kb on - strand, within PS417_24165 at 5236.282 kb on - strand, within PS417_24165 at 5236.316 kb on - strand, within PS417_24165 at 5236.501 kb on + strand, within PS417_24165 at 5236.546 kb on - strand, within PS417_24165 at 5236.821 kb on + strand at 5236.892 kb on - strand at 5236.936 kb on + strand at 5236.937 kb on - strand at 5236.959 kb on + strand at 5236.960 kb on - strand at 5236.960 kb on - strand at 5236.969 kb on + strand at 5236.969 kb on + strand at 5236.980 kb on + strand at 5237.053 kb on - strand at 5237.074 kb on + strand at 5237.084 kb on - strand at 5237.142 kb on + strand at 5237.143 kb on - strand at 5237.143 kb on - strand at 5237.144 kb on + strand at 5237.231 kb on + strand at 5237.232 kb on - strand at 5237.353 kb on - strand, within PS417_24170 at 5237.419 kb on + strand, within PS417_24170 at 5237.452 kb on + strand, within PS417_24170 at 5237.452 kb on + strand, within PS417_24170 at 5237.452 kb on + strand, within PS417_24170 at 5237.452 kb on + strand, within PS417_24170 at 5237.452 kb on + strand, within PS417_24170 at 5237.453 kb on - strand, within PS417_24170 at 5237.453 kb on - strand, within PS417_24170 at 5237.453 kb on - strand, within PS417_24170 at 5237.454 kb on + strand, within PS417_24170 at 5237.454 kb on + strand, within PS417_24170 at 5237.454 kb on + strand, within PS417_24170 at 5237.454 kb on + strand, within PS417_24170 at 5237.454 kb on + strand, within PS417_24170 at 5237.455 kb on - strand, within PS417_24170 at 5237.455 kb on - strand, within PS417_24170 at 5237.455 kb on - strand, within PS417_24170 at 5237.455 kb on - strand, within PS417_24170 at 5237.548 kb on + strand, within PS417_24170 at 5237.559 kb on - strand, within PS417_24170 at 5237.559 kb on - strand, within PS417_24170 at 5237.626 kb on - strand, within PS417_24170 at 5237.725 kb on + strand, within PS417_24170 at 5237.726 kb on - strand, within PS417_24170 at 5237.734 kb on + strand, within PS417_24170 at 5237.734 kb on + strand, within PS417_24170 at 5237.734 kb on + strand, within PS417_24170 at 5237.735 kb on - strand, within PS417_24170 at 5237.735 kb on - strand, within PS417_24170 at 5237.736 kb on + strand, within PS417_24170 at 5237.775 kb on + strand at 5237.776 kb on - strand, within PS417_24170 at 5237.776 kb on - strand, within PS417_24170 at 5237.776 kb on - strand, within PS417_24170
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 5,235,728 + +0.3 5,235,974 + -0.4 5,236,282 - PS417_24165 0.25 +1.1 5,236,282 - PS417_24165 0.25 +0.3 5,236,316 - PS417_24165 0.30 -0.6 5,236,501 + PS417_24165 0.57 +1.3 5,236,546 - PS417_24165 0.63 +1.0 5,236,821 + +0.1 5,236,892 - -0.8 5,236,936 + +1.1 5,236,937 - +0.0 5,236,959 + +0.6 5,236,960 - -0.1 5,236,960 - +1.0 5,236,969 + -0.3 5,236,969 + +0.3 5,236,980 + +0.1 5,237,053 - -0.3 5,237,074 + -1.2 5,237,084 - -0.1 5,237,142 + +0.6 5,237,143 - +0.9 5,237,143 - -0.6 5,237,144 + -0.6 5,237,231 + -0.1 5,237,232 - +0.1 5,237,353 - PS417_24170 0.10 -0.8 5,237,419 + PS417_24170 0.12 +0.5 5,237,452 + PS417_24170 0.12 +0.1 5,237,452 + PS417_24170 0.12 -0.0 5,237,452 + PS417_24170 0.12 +0.6 5,237,452 + PS417_24170 0.12 +0.1 5,237,452 + PS417_24170 0.12 -0.4 5,237,453 - PS417_24170 0.12 +2.8 5,237,453 - PS417_24170 0.12 +0.7 5,237,453 - PS417_24170 0.12 -0.1 5,237,454 + PS417_24170 0.12 -0.1 5,237,454 + PS417_24170 0.12 -0.9 5,237,454 + PS417_24170 0.12 -0.8 5,237,454 + PS417_24170 0.12 +0.1 5,237,454 + PS417_24170 0.12 -2.6 5,237,455 - PS417_24170 0.12 -1.3 5,237,455 - PS417_24170 0.12 +0.1 5,237,455 - PS417_24170 0.12 -0.2 5,237,455 - PS417_24170 0.12 -1.2 5,237,548 + PS417_24170 0.14 -0.8 5,237,559 - PS417_24170 0.14 +0.2 5,237,559 - PS417_24170 0.14 +1.3 5,237,626 - PS417_24170 0.15 -0.1 5,237,725 + PS417_24170 0.17 +0.6 5,237,726 - PS417_24170 0.17 -0.3 5,237,734 + PS417_24170 0.17 +0.2 5,237,734 + PS417_24170 0.17 -1.0 5,237,734 + PS417_24170 0.17 -0.4 5,237,735 - PS417_24170 0.17 -0.8 5,237,735 - PS417_24170 0.17 -0.5 5,237,736 + PS417_24170 0.17 -0.1 5,237,775 + +1.0 5,237,776 - PS417_24170 0.18 -0.4 5,237,776 - PS417_24170 0.18 +0.5 5,237,776 - PS417_24170 0.18 -1.0
Or see this region's nucleotide sequence