Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01210 and PS417_01215 are separated by 56 nucleotides PS417_01215 and PS417_01220 are separated by 28 nucleotides PS417_01220 and PS417_01230 are separated by 610 nucleotides
PS417_01210: PS417_01210 - hypothetical protein, at 265,433 to 266,974
_01210
PS417_01215: PS417_01215 - membrane protein, at 267,031 to 267,882
_01215
PS417_01220: PS417_01220 - hypothetical protein, at 267,911 to 268,267
_01220
PS417_01230: PS417_01230 - hypothetical protein, at 268,878 to 269,123
_01230
Position (kb) 267
268 Strain fitness (log2 ratio) -2
-1
0
1
2 at 266.204 kb on + strand, within PS417_01210 at 266.204 kb on + strand, within PS417_01210 at 266.205 kb on - strand, within PS417_01210 at 266.315 kb on + strand, within PS417_01210 at 266.316 kb on - strand, within PS417_01210 at 266.487 kb on - strand, within PS417_01210 at 266.504 kb on + strand, within PS417_01210 at 266.609 kb on + strand, within PS417_01210 at 266.609 kb on + strand, within PS417_01210 at 266.851 kb on + strand at 266.852 kb on - strand at 266.972 kb on + strand at 266.972 kb on + strand at 266.973 kb on - strand at 267.032 kb on + strand at 267.156 kb on + strand, within PS417_01215 at 267.156 kb on + strand, within PS417_01215 at 267.156 kb on + strand, within PS417_01215 at 267.157 kb on - strand, within PS417_01215 at 267.410 kb on + strand, within PS417_01215 at 267.591 kb on - strand, within PS417_01215 at 267.591 kb on - strand, within PS417_01215 at 267.795 kb on - strand, within PS417_01215 at 267.897 kb on - strand at 267.897 kb on - strand at 267.897 kb on - strand at 267.897 kb on - strand at 267.966 kb on + strand, within PS417_01220 at 267.967 kb on - strand, within PS417_01220 at 267.967 kb on - strand, within PS417_01220 at 268.054 kb on - strand, within PS417_01220 at 268.059 kb on + strand, within PS417_01220 at 268.059 kb on + strand, within PS417_01220 at 268.059 kb on + strand, within PS417_01220 at 268.060 kb on - strand, within PS417_01220 at 268.060 kb on - strand, within PS417_01220 at 268.060 kb on - strand, within PS417_01220 at 268.358 kb on + strand at 268.358 kb on + strand at 268.359 kb on - strand at 268.359 kb on - strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.397 kb on + strand at 268.401 kb on + strand at 268.401 kb on + strand at 268.401 kb on + strand at 268.401 kb on + strand at 268.402 kb on - strand at 268.402 kb on - strand at 268.402 kb on - strand at 268.406 kb on + strand at 268.406 kb on + strand at 268.409 kb on + strand at 268.409 kb on + strand at 268.409 kb on + strand at 268.423 kb on + strand at 268.500 kb on + strand at 268.501 kb on - strand at 268.501 kb on - strand at 268.501 kb on - strand at 268.504 kb on + strand at 268.504 kb on + strand at 268.598 kb on + strand at 268.598 kb on + strand at 268.599 kb on - strand at 268.599 kb on - strand at 268.599 kb on - strand at 268.648 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.652 kb on + strand at 268.653 kb on - strand at 268.820 kb on + strand at 268.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 266,204 + PS417_01210 0.50 -0.5 266,204 + PS417_01210 0.50 +0.4 266,205 - PS417_01210 0.50 +0.1 266,315 + PS417_01210 0.57 +0.4 266,316 - PS417_01210 0.57 -0.6 266,487 - PS417_01210 0.68 -0.0 266,504 + PS417_01210 0.69 +0.6 266,609 + PS417_01210 0.76 -0.4 266,609 + PS417_01210 0.76 +1.6 266,851 + -0.1 266,852 - +0.3 266,972 + -0.2 266,972 + -2.2 266,973 - -0.1 267,032 + +0.5 267,156 + PS417_01215 0.15 -1.1 267,156 + PS417_01215 0.15 -0.1 267,156 + PS417_01215 0.15 -0.0 267,157 - PS417_01215 0.15 -0.5 267,410 + PS417_01215 0.44 -0.9 267,591 - PS417_01215 0.66 -0.6 267,591 - PS417_01215 0.66 -1.2 267,795 - PS417_01215 0.90 -0.5 267,897 - +0.9 267,897 - -0.4 267,897 - -0.2 267,897 - -0.2 267,966 + PS417_01220 0.15 -0.6 267,967 - PS417_01220 0.16 +0.3 267,967 - PS417_01220 0.16 +0.0 268,054 - PS417_01220 0.40 +0.8 268,059 + PS417_01220 0.41 -0.3 268,059 + PS417_01220 0.41 -0.8 268,059 + PS417_01220 0.41 +1.9 268,060 - PS417_01220 0.42 -0.8 268,060 - PS417_01220 0.42 +0.9 268,060 - PS417_01220 0.42 +0.0 268,358 + +0.0 268,358 + -1.6 268,359 - -0.8 268,359 - -1.7 268,397 + -1.9 268,397 + +0.1 268,397 + -0.5 268,397 + +1.2 268,397 + -0.3 268,401 + -1.2 268,401 + -0.9 268,401 + +0.5 268,401 + +0.5 268,402 - +0.1 268,402 - +0.3 268,402 - -0.2 268,406 + +0.2 268,406 + +0.2 268,409 + -0.1 268,409 + -0.1 268,409 + -0.1 268,423 + +0.3 268,500 + -1.1 268,501 - -1.3 268,501 - +0.0 268,501 - +0.1 268,504 + -0.3 268,504 + -0.2 268,598 + +0.2 268,598 + -0.4 268,599 - -0.7 268,599 - -0.8 268,599 - -0.3 268,648 + -0.7 268,652 + -1.0 268,652 + +1.3 268,652 + +0.5 268,652 + -1.1 268,652 + +0.1 268,653 - -0.1 268,820 + +0.3 268,820 + +0.2
Or see this region's nucleotide sequence